| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4265906 | 21 (0.710) | 5 (0.180) | 5/248 | 2.6 | 19.6% | coding (125/1080 nt) | alr | alanine racemase, biosynthetic, PLP‑binding |
| ? | NC_000913 | = 4265911 | 21 (0.750) | coding (130/1080 nt) | alr | alanine racemase, biosynthetic, PLP‑binding | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TATCAAGGAACACAAATGCAAGCGGCAACTGTTGTGATTAACCGCCGCGCTCTGCGACACAACCTGCAACGTCTTCGTGAACTGGCCCCTGCCAGTAAAATGGTTGCGGTGGTGAAAGCGAACGCTTATGGTCACGGTCTTCTTGAGACCGCGCGAACGCTCCCCGATGCTGACGCCTTTGGCGTAGCCCGTCTCGAAGAAGCTCTGCGACTGCGTGCGGGGGGAATCACCAAACCTGTACTGTTACTCGAAGGCTTTTTTGAT > NC_000913/4265767‑4266030 | tATCAAGGAACACAAATGCAAGCGGCAACTGTTGTGATTAACCGCCGCGCTCTGCGACACAACCTGCAACGTCTTCGTGAACTGGCCCCTGCCAGTAAAATGGTTGCGGTGGTGAAAGCGAACGCTTATGGTCACGGTCTTCTTGagac < 4:75356‑M2/149‑5 (MQ=255) aaGGAACACAAATGCAAGCGGCAACTGTTGTGATTAACCGCCGCGCTCTGCGACACAACCTGCAACGTCTTCGTGAACTGGCCCCTGCCAGTAAAATGGTTGCGGTGGTGAAAGCGAACGCTTATGGTCACGGTCTTCTTGa > 6:37766‑M2/1‑141 (MQ=255) aaGGAACACAAATGCAAGCGGCAACTGTTGTGATTAACCGCCGCGCTCTGCGACACAACCTGCAACGTCTTCGTGAACTGGCCCCTGCCAGTAAAATGGTTGCGGTGGTGAAAGCGAACGCTTATGGTCACGGTCTTCTTGa < 5:37766‑M2/142‑2 (MQ=255) ttgtGATTAACCGCCGCGCTCTGCGACACAACCTGCAACGTCTTCGTGAACTGGCCCCTGCCAGTAAAATGGTTGCGGTGGTGAAAGCGAACGCTTATGGTCACGGTCTTCTTGAGACCGCGCGAACGCTCCCCGATGCTGACGCCtt < 5:91869/148‑1 (MQ=255) ttgtGATTAACCGCCGCGCTCTGCGACACAACCTGCAACGTCTTCGTGAACTGGCCCCTGCCAGTAAAATGGTTGCGGTGGTGAAAGCGAACGCTTATGGTCACGGTCTTCTTGAGACCGCGCGAACGCTCCCCGATGCTGACGCCtt > 6:91869/1‑148 (MQ=255) ttAACCGCCGCGCTCTGCGACACAACCTGCAACGTCTTCGTGAACTGGCCCCTGCCAGTAAAATGGTTGCGGTGGTGAAAGCGAACGCTTATGGTCACGGTCTTCTTGAGACCGCGCGAACGCTc < 8:26616/125‑1 (MQ=255) ttAACCGCCGCGCTCTGCGACACAACCTGCAACGTCTTCGTGAACTGGCCCCTGCCAGTAAAATGGTTGCGGTGGTGAAAGCGAACGCTTATGGTCACGGTCTTCTTGAGACCGCGCGAACGCTc > 7:26616/1‑125 (MQ=255) tAACCGCCGCGCTCTGCGACACAACCTGCAACGTCTTCGTGAACTGGCCCCTGCCAGTAAAATGGTTGCGGTGGTGAAAGCGAACGCTTATGGTCACGGTCTTCTTGAGACCGCGCGAACGCTCCCCGATGCTGACGCCTTTGGc > 8:110634/1‑145 (MQ=255) tAACCGCCGCGCTCTGCGACACAACCTGCAACGTCTTCGTGAACTGGCCCCTGCCAGTAAAATGGTTGCGGTGGTGAAAGCGAACGCTTATGGTCACGGTCTTCTTGAGACCGCGCGAACGCTCCCCGATGCTGACGCCTTTGGc < 7:110634/145‑1 (MQ=255) gCAACGTCTTCGTGAACTGGCCCCTGCCAGTAAAATGGTTGCGGTGGTGAAAGCGAACGCTTATGGTCACGGTCTTCTTGAGACCGCGCGAACGCTCCCCGATGCTGACGCCTTTGGCGTAGCCCGTCTCGAAGAAGCTCTGCGACtgc > 2:134697/1‑149 (MQ=255) cAACGTCTTCGTGAACTGGCCCCTGCCAGTAAAATGGTTGCGGTGGTGAAAGCGAACGCTTATGGTCACGGTCTTCTTGAGACCGCGCGAAc > 1:159513/1‑92 (MQ=255) cAACGTCTTCGTGAACTGGCCCCTGCCAGTAAAATGGTTGCGGTGGTGAAAGCGAACGCTTATGGTCACGGTCTTCTTGAGACCGCGCGAAc < 2:159513/92‑1 (MQ=255) tCTTCGTGAACTGGCCCCTGCCAGTAAAATGGTTGCGGTGGTGAAAGCGAACGCTTATGGTCACGGTCTTCTTGAGACCGCGCGAACGCt < 8:45471/90‑1 (MQ=255) tCTTCGTGAACTGGCCCCTGCCAGTAAAATGGTTGCGGTGGTGAAAGCGAACGCTTATGGTCACGGTCTTCTTGAGACCGCGCGAACGCt > 7:45471/1‑90 (MQ=255) tCTTCGTGAACTGGCCCCTGCCAGTAAAATGGTTGCGGTGGTGAAAGCGAACGCTTATGGTCACGGTCTTCTTGAGACCGCGCGAACGCTCCCCGATGCTGACGCCTTTGGCGTAGCCCGTCTCGAAGAAGCTCTGCGACTGCGTGCgg < 3:75356/149‑1 (MQ=255) ccattttaCTGGCAGCGGCCAGTAAAATGGTTGCGGTGGTGAAAGCGAACGCTTATGGTCACGGTCTTCTTGAGACCGCGCGAACGCTCCCCGATGCTGACGCCTTTGGCGTAGCCCGTCTCGAAGAAGCACTGCGACTGCGAGCgggg > 6:83042/8‑149 (MQ=255) cGTGAACTGGCCCCTGCCAGTAAAATGGTTGCGGTGGTGAAAGCGAACGCTTATGGTCACGGTCTTCTTGAGACCGCGCGAACGCTCCCCGATGCTGACGCCTTTGGCGTAGCCCGTCTCGAAGAAGCTCTGCGACTGCGTGCgggg < 1:134697/147‑1 (MQ=255) ccAGTAAAATGGTTGCGGTGGTGAAAGCGATCGCTTATGGTCACGGTCTGCTTGAGACCGCGCGAACGCTCCCCGATGCTGACGGCTTTGGCGTAGCCCGGCTCGAAGAAGCTCTGCGTCTGCGTGCGGGGGGAATCACCAAACCTGTa < 5:83042/149‑1 (MQ=255) ccAGTAAAATGGTTGCGGTGGTGAAAGCGAACGCTTATGGTCACGGTCTTCTTGAGACCGCGCGAACGCTCCCCGATGCTGACGCCTTTGGCGTAGCCCGTCTCGAAGAAGCTCTGCGACTGCGTGCGGGGGGAATCACCAAACCTGTa < 5:80992/149‑1 (MQ=255) aGTAAAATGGTTGCGGTGGTGAAAGCGAACGCCTATGGTCACGGTCTTCTTGAGACCGCGCGAACGCTCCCCGATGCTGACGCCTTTGGCGTAGCCCGTCTCGAAGAAGCTCTGCGACTGCGTGCGGGGGGAATCACCAAACCTGTACt > 3:106653/1‑149 (MQ=255) tgAAAGCGAACGCTTATGGTCACGGTCTTCTTGagaccgtgaccataagcgttcgctttcaccaccgcaaccattttactgg < 1:122471‑M2/82‑50 (MQ=255) tgAAAGCGAACGCTTATGGTCACGGTCTTCTTGagaccgtgaccataagcgttcgctttcaccaccgcaaccattttactgg > 2:122471‑M2/1‑33 (MQ=255) tgAAAGCGAACGCTTATGGTCACGGTCTTCTTGAGACCGCGCGAACGCTCCCCGATGCTGACGCCTTTGGCGTAGCCCGTCTCGAAGAAGCTCTGCGACTGCGTGCGGGGGGAATCACCAAACCTGTACTGTTACTCGAAGGCtttttt > 6:149326/1‑149 (MQ=255) aaGCGAACGCTTATGGTCACGGTCTTCTTGAGACCGCGTGAACGCTCCCCGATGCTGACGCCTTTGGCGTAGCCCGTCTCGAAGAAGCTCTGCGACTGCGTGCGGGGGGAATCACCAAACCTGTACTGTTACTCGAAGGCTTTTTTGAt < 1:135905/149‑1 (MQ=255) tCACGGTCTTCTTGagaccgtgaccataagcgttcgctttcaccaccgcaaccattttactggcaggggccagttcacgaagacgttgcaggttgtgtcgcagagcgcggcggttaat > 7:99717‑M2/1‑14 (MQ=255) tCACGGTCTTCTTGagaccgtgaccataagcgttcgctttcaccaccgcaaccattttactggcaggggccagttcacgaagacgttgcaggttgtgtcgcagagcgcggcggttaat < 8:99717‑M2/118‑105 (MQ=255) tCACGGTCTTCTTGagaccgtgaccataagcgttcgctttcaccaccgcaaccattttactggca > 2:46867‑M2/1‑14 (MQ=255) gagaCCGCGCGAACGCTCCCCGATGCTGACGCCTTTGGCGTAGCCCGTCTCGAAGAAGCTCTGCGACTGCGTGCGGGGGGAATCACCAAAc > 6:71815/1‑91 (MQ=255) gagaCCGCGCGAACGCTCCCCGATGCTGACGCCTTTGGCGTAGCCCGTCTCGAAGAAGCTCTGCGACTGCGTGCGGGGGGAATCACCAAAc < 5:71815/91‑1 (MQ=255) | TATCAAGGAACACAAATGCAAGCGGCAACTGTTGTGATTAACCGCCGCGCTCTGCGACACAACCTGCAACGTCTTCGTGAACTGGCCCCTGCCAGTAAAATGGTTGCGGTGGTGAAAGCGAACGCTTATGGTCACGGTCTTCTTGAGACCGCGCGAACGCTCCCCGATGCTGACGCCTTTGGCGTAGCCCGTCTCGAAGAAGCTCTGCGACTGCGTGCGGGGGGAATCACCAAACCTGTACTGTTACTCGAAGGCTTTTTTGAT > NC_000913/4265767‑4266030 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |