New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2805380	20 (0.560)	6 (0.180)	5/230	3.0	22.4%	coding (566/1203 nt)	proV	glycine betaine/proline ABC transporter periplasmic binding protein
	?	NC_000913	= 2805401	23 (0.700)					coding (587/1203 nt)	proV	glycine betaine/proline ABC transporter periplasmic binding protein

ACTGCGTCAGGTCGGGCTGGAAAATTATGCCCACAGCTACCCGGATGAACTCTCTGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAGCGCACCATTGTCTTTATTTCCCACGATCTTGATGAAGCCATGCGTATTGGCGACCGAATTGCCATTATGCAAAATGGTGAAGTGGTA  >  NC_000913/2805258‑2805546                                                                                                                                                |                                                                                                                                                  aCTGCGTCAGGTCGGGCTGGAAAATTATGCCCACAGCTACCCGGATGAACTCTCTGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGAtccat                                                                                                                                              <  6:58012‑M2/149‑6 (MQ=255)                   ggAAAATTATGCCCACAGCTACCCGGATGAACTCTCTGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGc                                                                                                                            <  5:58012/149‑1 (MQ=255)                               ccACAGCTACCCGGATGAACTCTCTGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTgg                                                                                                                >  3:101434/1‑149 (MQ=255)                                                   tctctGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACa                                                                                                      >  1:65252/1‑139 (MQ=255)                                                   tctctGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACa                                                                                                      <  2:65252/139‑1 (MQ=255)                                                        ggCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAgcg                                                                                       >  8:75274/1‑149 (MQ=255)                                                                       cGTGTGGGATTACCCCGCGCGGTAGCGATTAAACCGGATATATTATTAATGGCCCAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAGCGCACCATAGTCTTTAt                                                                        <  4:101434/149‑1 (MQ=255)                                                                                ttAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGc                                                                                                   <  2:133028/113‑1 (MQ=255)                                                                                ttAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGc                                                                                                   >  1:133028/1‑113 (MQ=255)                                                                                     ccGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGAtc                                                                                                                                                 >  2:135589‑M2/1‑60 (MQ=255)                                                                                     ccGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAGCGCACCATTGTCTTTATTTCCCACGATCtt                                                           >  6:20079/1‑148 (MQ=255)                                                                                     ccGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCATTCTCGGCGCTCGATACATTAATTCGCACCGAGATTCAGGATGAGCTGGTAAAATTACATGCGAAACATCAGCGAACCATTGTCTTTATTTCCCACTATCtt                                                           >  8:132295/1‑148 (MQ=255)                                                                                               gCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAGCGCACCATTGTCTTTATTTCCCACGATCTTGATGAAGCCAt                                                <  5:20079/149‑1 (MQ=255)                                                                                                  aTTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAGCGCACCATTGTCTTTATTTCCCACGATCTTGATGAAGCCATGCg                                             >  1:91843/1‑149 (MQ=255)                                                                                                       tCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAGCGCACCATTGTCTTTATTTCCCACGATCTTGATGAAGCCATGCGTATTg                                        >  1:24554/1‑149 (MQ=255)                                                                                                       tCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAGCGCACCATTGTCTTTATTTCCCACGATCTTGATGAAGCCATGCGTATTg                                        >  4:83112/1‑149 (MQ=255)                                                                                                           gATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGAtccattaataatatatccggattaatcgctaacgcgcgggctaatcccacacgttgacgcatcccgccagagagttcatccgggtagctgtgggcataattttccagccc                                     <  2:17268‑M2/148‑111 (MQ=255)                                                                                                           gATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGAtccattaataatatatccggattaatcgctaacgcgcgggctaatcccacacgttgacgcatcccgccagagagttcatccgggtagctgtgggcataattttccagccc                                     <  8:104869‑M2/148‑111 (MQ=255)                                                                                                                attattAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGAt                                                                                                                       >  8:152569/1‑61 (MQ=255)                                                                                                                attattAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGAt                                                                                                                       <  7:152569/61‑1 (MQ=255)                                                                                                                 ttattaATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAGCGCACCATTGTCTTTATTTCCCACGATCTTGATGAAGCCATGCGTATTGGCGACCGAAt                              <  2:24554/149‑1 (MQ=255)                                                                                                                   attaATGGACGAAGCCTTCTCGGCGCTCGAtccattaataatatatccggattaatcgctaacgcgcgggctaatcccacacgttgacgcatcccgccagagagttcatccgggtagctgtgggcataattttc                                           >  5:36477‑M2/1‑30 (MQ=255)                                                                                                                   attaATGGACGAAGCCTTCTCGGCGCTCGAtccattaataatatatccggattaatcgctaacgcgcgggctaatcccacacgttgacgcatcccgccagagagttcatccgggtagctgtgggcataattttc                                           <  6:36477‑M2/134‑105 (MQ=255)                                                                                                                       aTGGACGAAGCCTTCTCGGCGCTCGAtccattaataatatatccggattaatcgctaacgcgcgggctaatcccacacgttgacgcatcccgccagagagttcatccgggtagctgtgggcataattttccagcccgacctgacgcagt                        >  7:104869‑M2/1‑26 (MQ=255)                                                                                                                              aaGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAGCGCACCATTGTCTTTATTTCCCACGATCTTGATGAAGCCATGCGTATTGGCGACCGAATTGCCATTATGCaa                 <  2:91843/149‑1 (MQ=255)                                                                                                                                  cTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAGCGCACCATTGTCTTTATTTCCCACGATCTTGATGAAGCCATGCGTATTGGCGACCGAATTGCCATTATGCAAAATg             <  3:83112/149‑1 (MQ=255)                                                                                                                                   ttCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAAc                                                                                              <  4:6479/67‑1 (MQ=255)                                                                                                                                   ttCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAAc                                                                                              >  3:6479/1‑67 (MQ=255)                                                                                                                                     ctcGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAGCGCACCATTGTCTTTATTTCCCACGATCTTGATGAAGCCATGCGTATTGGCGACCGAATTGCCATTATGCAAAATgg            <  7:75274/147‑1 (MQ=255)                                                                                                                                         gagcTCGATCAATTAATTCGCACAGAGATGCAGGATGAGCTGCTAAAAATACAGGCGAAACATCAGCGCACCAGTGTATTTATTTCCCACGATCTTGATGAAGCCATGCGTATTGGCGACCTAATTGCCATAATGCAAAATTGAGAAGt      >  2:134119/3‑149 (MQ=255)                                                                                                                                               gAtccattaataatatatccggattaatcgctaacgcgcgggctaatcccacacgttgacgcatcccgccagagagttcatccgggtagctgtgggcataattttccagcccgacctgacgcagtgcatcaagggctttttcccggc  >  1:17268‑M2/1‑2 (MQ=255)                                                                                                                                                |                                                                                                                                                  ACTGCGTCAGGTCGGGCTGGAAAATTATGCCCACAGCTACCCGGATGAACTCTCTGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAGCGCACCATTGTCTTTATTTCCCACGATCTTGATGAAGCCATGCGTATTGGCGACCGAATTGCCATTATGCAAAATGGTGAAGTGGTA  >  NC_000913/2805258‑2805546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.