New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 756109	9 (0.250)	15 (0.430)	14/240	1.3	73.7%	coding (203/1767 nt)	sdhA	succinate dehydrogenase, flavoprotein subunit
	?	NC_000913	= 756216	2 (0.060)					coding (310/1767 nt)	sdhA	succinate dehydrogenase, flavoprotein subunit

TGCGCTGGGTAATACCCATGAAGATAACTGGGAATGGCATATGTACGACACCGTGAAAGGGTCGGACTATATCGGTGACCAGGACGCGATTGAATATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACA  >  NC_000913/756071‑756348                                                                                                                                                  |                                                                                                                                     gttgatagatacgaccatcatcgagacgcgagaacGGCATATGTACGACACCGTGAAAGGGTCGGACTATATCGGTGACCAGGACGCGATTGAATATCTGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGc                                                                                                                                   >  4:44827‑M1/36‑149 (MQ=255)     atagatacgaccatcatcgagacgcgagaacGGCATATGTACGACACCGTGAAAGGGTCGGACTATATCGGTGACCAGGACGCGATTGAATATATGTGAAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCctgccatt                                                                                                                               >  6:24419‑M1/32‑146 (MQ=255)         atacgaccatcatcgagacgcgagaacGGCATATGTACGACACCGTGAAAGGGTCGGACTATATCGGTGACCAGGACGCGATTGAATATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCAttcc                                                                                                                             <  5:58747‑M1/120‑2 (MQ=255)          tacgaccatcatcgagacgcgagaacGGCATATGTACGACACCGTGAAAGGGTCGGACTATATCGGTGACCAGGACGCGATTGAATATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGccattcccag                                                                                                                          >  6:58747‑M1/27‑145 (MQ=255)             gaccatcatcgagacgcgagaacGGCATATGTACGACACCGTGAAAGGGTCGGACTATATCGGTGACCAGGACGCGATTGAATATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCctgccattcccagtta                                                                                                                       >  7:109510‑M1/24‑142 (MQ=255)                                              cGACACCGTGAAAGGGTCGGACTATATCGGTGACCAGGACGCGATTGAATATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCtgccattcccagttatcttcatgggtattacccagcgcaacggtaat                                                                                       >  6:172887‑M2/1‑101 (MQ=255)                                                              tCGGACTATATCGGTGACCAGGACGCGATTGAATATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCtgccattccca                                                                                                                           <  1:9681‑M2/96‑12 (MQ=255)                                                              tCGGACTATATCGGTGACCAGGACGCGATTGAATATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCtgccattccca                                                                                                                           >  2:9681‑M2/1‑85 (MQ=255)                                                                 gACTATATCGGTGACCAGGACGCGATTGAATATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCtgccattcccagttatcttcatgggtattacccagcgcaacggtaatgccgccttgcgcagaaacgg                                                                   <  8:120433‑M2/149‑68 (MQ=255)                                                                 gACTATATCGGTGACCAGGACGCGATTGAATATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCtgccattcccagttatcttcatgggtattacccagcgcaacggtaatgccgccttgcgcagaaacgg                                                                   <  1:138224‑M2/149‑68 (MQ=255)                                                                      tatCGGTGACCAGGACGCGATTGAATATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCg                                                                                          >  5:167957/1‑121 (MQ=255)                                                                      tatCGGTGACCAGGACGCGATTGAATATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCg                                                                                          <  6:167957/121‑1 (MQ=255)                                                                            tGACCAGGACGCGATTGAATATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCtgccattcccagttatcttcatgggtattacccagcgcaacggtaatgccgccttgcgcagaaacggtatgggaacgg                                                        >  7:120433‑M2/1‑71 (MQ=255)                                                                                    aCGCGATTGAATATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCtgccattcccagttatcttcatgggtattacccagcgcaacggtaatgccgccttgcgcagaaacggtatgggaacgggtcggg                                                  <  2:168501‑M2/147‑85 (MQ=255)                                                                                                      gtAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCtgccattcccagttatcttcatgggtattacccagcgcaacggtaatgccgccttgcgcagaaacggtatgggaacgggtcgggaagactttagagagcagcg                               <  7:71932‑M2/148‑104 (MQ=255)                                                                                                                              tGGAACTCGAACACATGGGCCtgccattcccagttatcttcatgggtattacccagcgcaacggtaatgccgccttgcgcagaaacggtatgggaacgggtcgggaagactttagagag                                    <  2:23573‑M2/119‑99 (MQ=255)                                                                                                                              tGGAACTCGAACACATGGGCCtgccattcccagttatcttcatgggtattacccagcgcaacggtaatgccgccttgcgcagaaacggtatgggaacgggtcgggaagactttagagag                                    >  1:23573‑M2/1‑21 (MQ=255)                                                                                                                               ggAACTCGAACACATGGGCCtgccattcccagttatcttcatgg                                                                                                              >  7:10630‑M2/1‑20 (MQ=255)                                                                                                                               ggAACTCGAACACATGGGCCtgccattcccagttatcttcatgg                                                                                                              <  8:10630‑M2/44‑25 (MQ=255)                                                                                                                                  aCTCGAACACATGGGCCtgccattcccagttatcttcatgggtattacccagcgcaacggtaatgccgccttgcgcagaaacggtatgggaacgggtcgggaagactttagagagcagcgcacaggtctggccgctctgggaaatttgc  >  1:168501‑M2/1‑17 (MQ=255)                                                                                                                                                  ctgccattcccagttatcttcatgggtattacccagcgcaacggtaatgccgccttgc                                                                             <  2:196362‑M2/58‑58 (MQ=255)                                                                                                                                                  ctgccattcccagttatcttcatgggtattacccagcgcaacggtaatgccgccttgc                                                                             >  1:196362‑M2/1‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                     TGCGCTGGGTAATACCCATGAAGATAACTGGGAATGGCATATGTACGACACCGTGAAAGGGTCGGACTATATCGGTGACCAGGACGCGATTGAATATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACA  >  NC_000913/756071‑756348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.