New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3202956	34 (0.930)	6 (0.170)	6/228	2.9	14.6%	coding (1066/1239 nt)	cca	fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase
	?	NC_000913	= 3202969	38 (1.100)					coding (1079/1239 nt)	cca	fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase
Rejected: Frequency below/above cutoff threshold.

CCAATGCTGAACCCAAAAACCATCGTCAAATTATTTGATTCCATCGATGCCTGGCGTAAACCGCAGCGTGTCGAGCAACTGGCGCTGACCAGCGAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTGGAGATTCGCGAGGAGCTGACCCGACGGCGGATTGCGGCGGTAGCCAGCTGGAAGGAACAAC  >  NC_000913/3202824‑3203109                                                                                                                                                  |                                                                                                                                             ccAATGCTGACCCCCAAAACCATCGTCAAATTATTTGATTCCATCGATGCCTTGCGTAAAACGCCGCGTGGCGAGCAACTGGCGCGGACCCGCGAGGCTGCCGTGCGCGGCAGAGCCGGTTTTGAATCAGCGGCCTACCCGAAAGGccg                                                                                                                                           <  8:162968‑M2/149‑4 (MQ=255)       cTGAACCCAAAAACCATCGTCAAATTATTTGATTCCATCGATGCCTGGCGTAAACCGCAGCGTGTCGAGCAACTGGCGCTGACCAGCGAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGtt                                                                                                                                     >  2:106753/1‑149 (MQ=255)           aCCCAAAAACCATCGTCAAATTATTTGATTCCATCGATGCCTGGCGTAAACCGCAGCGTGTCGAGCAACTGGCGCTGACCAGCGAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGAGGACTACCCGCAAGGCCGCTGGTTgcgc                                                                                                                                 <  7:38334/149‑1 (MQ=255)                               ttattTGATTCCATCGATGCCTGGCGTAAACCGCAGCGTGTCGAGCAACTGGCGCTGACCAGCGAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGgcg                                                                                                               >  3:54148/1‑147 (MQ=255)                                  tttGATTCCCTCGATGCCTGGCGTAAACCGCAGCGTGTCGAGCAACTGGCGCTGACCAGCGAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGcagt                                                                                                           <  6:187156/148‑1 (MQ=255)                                       ttCCATCGATGCCTGGCGTAAACCGCAGCGTGTCGAGCAACTGGCGCTGACCAGCGAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGc                                                                                                     >  6:46458/1‑149 (MQ=255)                                                   cTGGCGTAAACTGCAGCGTGTCGAGCAACTGGCGCTGACCAGCGAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCcg                                                                                         >  7:145608/1‑149 (MQ=255)                                                   cTGGCGTAAACCGCAGCGTGTCGAGCAACTGGCGCTGACCAGCGAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCcg                                                                                         >  7:109483/1‑149 (MQ=255)                                                                       tCGAGCAACTGGCGCTGACCAGCGAGGCTGACGTGCGCGCCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCg                                                                              >  1:195175/1‑140 (MQ=255)                                                                       tCGAGCAACTGGCGCTGACCAGCGAGGCTGACGTGCGCGCCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCg                                                                              <  2:195175/140‑1 (MQ=255)                                                                              aCTGGCGCTGACCAGCGAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTgg                                                              <  4:54148/149‑1 (MQ=255)                                                                              aCTGGCGCTGACCAGCGAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTgg                                                              <  1:106753/149‑1 (MQ=255)                                                                                    gcTGACCAGCGAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGc                                                                               >  7:49874/1‑126 (MQ=255)                                                                                    gcTGACCAGCGAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGc                                                                               <  8:49874/126‑1 (MQ=255)                                                                                        aCCAGCGAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTGGAGATTCGCga                                                    <  8:22417/149‑1 (MQ=255)                                                                                         ccAGCGAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACACAAGCCGTCGTTGAAGCGGGa                                                                           >  2:111495/1‑125 (MQ=255)                                                                                         ccAGCGAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGa                                                                           <  1:111495/125‑1 (MQ=255)                                                                                         ccAGCGAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTGGAGATTCGCgag                                                   <  5:46458/149‑1 (MQ=255)                                                                                          cAGCGAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCGGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTGGAGATTCGCgag                                                   >  6:99512/1‑148 (MQ=255)                                                                                          cAGCGAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCGGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTGGAGATTCGCgag                                                   <  5:99512/148‑1 (MQ=255)                                                                                            gCGAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTg                                                                                                                         >  7:98416/1‑76 (MQ=255)                                                                                            gCGAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTg                                                                                                                         <  8:98416/76‑1 (MQ=255)                                                                                            gCGAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTGGAGATTCGCgaggag                                                >  4:39129/1‑149 (MQ=255)                                                                                              gAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTGGAGATTCGCGAGGAGCt                                              <  8:145608/149‑1 (MQ=255)                                                                                                            cgGCAGTACCGGTTTTGATTGAGCGGACTACGCGGAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTGGAGATTCGCGAGGAGCTGACCCGACGGCGGa                                <  8:109483/149‑1 (MQ=255)                                                                                                             ggCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGAGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTGGAGATTCGCGAGGAGCTGACCCGACGGCGGAt                               >  4:11945/1‑149 (MQ=255)                                                                                                              gCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTGGAGATTCGCgag                                                   <  1:114292/128‑1 (MQ=255)                                                                                                              gCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTGGAGATTCGCgag                                                   >  2:114292/1‑128 (MQ=255)                                                                                                                       gTTTTGAATCAGCGGACTACCCGCAAGGTCTCTGGGTGCGCGAAGCCTGGGAAGGTGCGCAGTCAGGGCCGACAAAAGCCGGCGTTGAAGCGGGTTTTTAATGTGTGGAGATTCGCGAGGATCTGACCCGACGGCGGATTGCGGCGGTa                     <  7:162968/149‑1 (MQ=255)                                                                                                                         tttGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTGGAGATTCGCGAGGAGCTGACCCGACGGCGGATTGCGGCGGTAGc                   >  2:3722/1‑149 (MQ=255)                                                                                                                              aTCAGCGGACTACCCGCAAGGccgctgattcaaaaccggttctgccgcgcacgtcagcctcgctggtcagcgccagttgctc                                                                                 >  3:88863‑M2/1‑21 (MQ=255)                                                                                                                              aTCAGCGGACTACCCGCAAGGccgctgattcaaaaccggttctgccgcgcacgtcagcctcgctggtcagcgccagttgctc                                                                                 <  4:88863‑M2/82‑62 (MQ=255)                                                                                                                              aTCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTGGAGATTCGCGAGGAGCTGACCCGACGGCGGATTGCGGCGGTAGCCAGCt              >  2:32193/1‑149 (MQ=255)                                                                                                                               tCAGCGGACTACCCGCAAGGccgctgattcaaaaccggttctgccgcgcacgtcagcctcgc                                                                                                    <  3:43786‑M2/62‑43 (MQ=255)                                                                                                                               tCAGCGGACTACCCGCAAGGccgctgattcaaaaccggttctgccgcgcacgtcagcctcgc                                                                                                    >  4:43786‑M2/1‑20 (MQ=255)                                                                                                                               tCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTGGAGATTCGCGAGGAGCTGa                                            >  6:41959/1‑118 (MQ=255)                                                                                                                               tCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTGGAGATTCGCGAGGAGCTGa                                            <  5:41959/118‑1 (MQ=255)                                                                                                                                 aGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTGGAGATTCGCGAGGAGCTGACCCGACGGCGGATTGCGGCGGTAGCCAGCTgg            <  1:32193/148‑1 (MQ=255)                                                                                                                                  gCGGACTACCCGCAAGGccgctgattcaaaaccggttctgccgcgcacgtcagcctcgctggtcagcgccagttgctcgacacgctgcggtttacgccaggcatcgatggaatcaaataatttgacgat                              >  2:25761‑M2/1‑17 (MQ=255)                                                                                                                                  gCGGACTACCCGCAAGGccgctgattcaaaaccggttctgccgcgcacgtcagcctcgctggtcagcgccagttgctcgacacgctgcggtttacgccaggcatcgatggaatcaaataatttgacgat                              <  1:25761‑M2/129‑113 (MQ=255)                                                                                                                                      aCTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTgg                                                              <  7:55444/93‑1 (MQ=255)                                                                                                                                      aCTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTgg                                                              >  8:55444/1‑93 (MQ=255)                                                                                                                                       cTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTGGAGATTCGCGAGGAGCTGACCCGACGGCGGATTGCGGCGGTAGCCAGCTGGAAGGaac     <  1:3722/149‑1 (MQ=255)                                                                                                                                           ccGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGCAGCGGGAATTAAAGGTGTGGAGATTCGCGAGCAGCTCCCCCGACGGCGGATTGCGGCGGAAACCAGCTGGAAGCaacaac  >  6:155388/1‑148 (MQ=255)                                                                                                                                           ccGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTGGAGATTCGCgag                                                   <  1:178164/99‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                             CCAATGCTGAACCCAAAAACCATCGTCAAATTATTTGATTCCATCGATGCCTGGCGTAAACCGCAGCGTGTCGAGCAACTGGCGCTGACCAGCGAGGCTGACGTGCGCGGCAGAACCGGTTTTGAATCAGCGGACTACCCGCAAGGCCGCTGGTTGCGCGAAGCCTGGGAAGTGGCGCAGTCAGTGCCGACAAAAGCCGTCGTTGAAGCGGGATTTAAAGGTGTGGAGATTCGCGAGGAGCTGACCCGACGGCGGATTGCGGCGGTAGCCAGCTGGAAGGAACAAC  >  NC_000913/3202824‑3203109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.