New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	577253 =	53 (1.310)	7 (0.180)	7/244	3.1	12.3%	intergenic (‑428/‑145)	nmpC/essD	DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage/DLP12 prophage; putative phage lysis protein
	?	NC_000913	577275 =	50 (1.310)					intergenic (‑450/‑123)	nmpC/essD	DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage/DLP12 prophage; putative phage lysis protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAATTTACACCCGCTTTGTCTGCGAGGT  >  NC_000913/577109‑577391                                                                                                                                                 |                                                                                                                                            tttttGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAAcc                                                                                                                                         >  4:31853/1‑149 (MQ=255)               ttgAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCggg                                                                                                                          >  1:84240/1‑149 (MQ=255)                   gaTTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGtttt                                                                                                                      <  7:158591/149‑1 (MQ=255)                   gaTTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGtttt                                                                                                                      <  2:84240/149‑1 (MQ=255)                     tttGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCTCGACG‑GCGGGtttaag                                                                                                                    <  6:119812/149‑4 (MQ=255)                         cTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTaaa                                                                                                                                           >  8:48341/1‑123 (MQ=255)                         cTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTaaa                                                                                                                                           <  7:48341/123‑1 (MQ=255)                             tGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCAttttt                                                                                                             <  3:10232/148‑1 (MQ=255)                              gTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCAtttttt                                                                                                            >  3:15642/1‑148 (MQ=255)                              gTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCAttttt                                                                                                             >  4:49672/1‑147 (MQ=255)                              gTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCAttttt                                                                                                             <  3:49672/147‑1 (MQ=255)                                                  aaTACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGAt                                                                                        >  5:91835/1‑148 (MQ=255)                                                           tAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAAc                                                                                     >  6:193041/1‑142 (MQ=255)                                                           tAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAAc                                                                                     <  5:193041/142‑1 (MQ=255)                                                               aTTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCt                                                                            >  7:33605/1‑147 (MQ=255)                                                                ttCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCAtttttt                                                                                                            >  1:128167/1‑114 (MQ=255)                                                                ttCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCAtttttt                                                                                                            <  2:128167/114‑1 (MQ=255)                                                                    ctcAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTAt                                                                     >  5:50166/1‑149 (MQ=255)                                                                     tcAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTAtt                                                                    >  3:24885/1‑149 (MQ=255)                                                                       aaaTATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTcc                                                                                                                   >  8:103747/1‑100 (MQ=255)                                                                       aaaTATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTcc                                                                                                                   <  7:103747/100‑1 (MQ=255)                                                                       aaaTATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCa                                                                  <  6:91835/149‑1 (MQ=255)                                                                               tttAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTcc                                                          <  3:31853/149‑1 (MQ=255)                                                                               tttAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTcc                                                          <  4:15642/149‑1 (MQ=255)                                                                                      gTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTg                                                   >  8:111934/1‑149 (MQ=255)                                                                                      gTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTg                                                   >  3:20487/1‑149 (MQ=255)                                                                                             tacgtaAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGtt                                            <  6:50166/149‑1 (MQ=255)                                                                                                gtaAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCg                                         <  4:24885/149‑1 (MQ=255)                                                                                                    aacaTTGTTTATGCTGTTAAGAGTGGGTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACt                                                                <  6:119067/119‑1 (MQ=255)                                                                                                    aaaaTTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTg                                                   >  2:174127/1‑135 (MQ=255)                                                                                                    aaaaTTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTg                                                   <  1:174127/135‑1 (MQ=255)                                                                                                      aaTTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTAt                                   >  1:120760/1‑149 (MQ=255)                                                                                                         tGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTc                                 <  2:120760/148‑1 (MQ=255)                                                                                                           gTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCt                              >  1:4619/1‑149 (MQ=255)                                                                                                              aTGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCaa                           >  7:106798/1‑149 (MQ=255)                                                                                                               tGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCaa                           <  2:11486/148‑1 (MQ=255)                                                                                                               tGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAAt                          <  2:4619/149‑1 (MQ=255)                                                                                                               tGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAAt                          >  2:82357/1‑149 (MQ=255)                                                                                                                      aaGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAATTTacac                    <  1:82357/148‑1 (MQ=255)                                                                                                                       agagTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCgta                                       >  8:5286/1‑128 (MQ=255)                                                                                                                       agagTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCgta                                       <  7:5286/128‑1 (MQ=255)                                                                                                                       agagTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAAtt                         >  5:94515/1‑142 (MQ=255)                                                                                                                       agagTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAAtt                         <  6:94515/142‑1 (MQ=255)                                                                                                                             gTTACTTCGTCACACAGCTTAAACCCGC‑CGGCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAATTTACACCCGCttt             <  5:55027/148‑1 (MQ=255)                                                                                                                              ttACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTcc                                >  5:172001/1‑128 (MQ=255)                                                                                                                              ttACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTcc                                <  6:172001/128‑1 (MQ=255)                                                                                                                                aCTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCATTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAATTTACACCCGCTTTGTCt         >  3:167568/1‑149 (MQ=255)                                                                                                                                       cacacaGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAATTTACACCCGCTTTGTCTGCGAGGt  >  8:120454/1‑149 (MQ=255)                                                                                                                                        acacaGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCATTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAATTTACACCCGCTTTGTCTGCGAGGt  <  4:167568/148‑1 (MQ=255)                                                                                                                                         cacaGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAAt                                                                                >  4:31624/1‑69 (MQ=255)                                                                                                                                         cacaGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAAt                                                                                <  3:31624/69‑1 (MQ=255)                                                                                                                                            aGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAAttt                        >  7:72352/1‑122 (MQ=255)                                                                                                                                            aGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAAttt                        <  8:72352/122‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                            TTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGC‑CGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAATTTACACCCGCTTTGTCTGCGAGGT  >  NC_000913/577109‑577391

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.