| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 288413 | 79 (0.790) | 4 (0.040) | 4/266 | 9.3 | 5.3% | coding (750/759 nt) | yagI | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | = 288439 | 69 (0.740) | coding (724/759 nt) | yagI | CP4‑6 prophage; putative DNA‑binding transcriptional regulator | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTATGAGGCGTGGAAGCTGTCGGACGACTACATCGGCGGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/288258‑288413‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggccgggCTCGCGCTCTCGCGCGCGCTGGGCTACCCGGCCTGAGCCGTTAGACCGGCTCGTAGGTGAAGTAGTCGAAGTCCGCGTAGCAGCCGTCGCCGCTGATGTCCTCGCAGTGCAGGCCCACAAACGCGCCGGTGAAGAAGCCGCGCCCGCC < NC_000913/288439‑288292 GTATGAGGCGTGGAAGCTGTCGGACGACTACATCGGCGGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCA < 5:217830/149‑1 TGAGGCGTGGAAGCTGTCGGACGACTACATCGGCGGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGCCATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGC > 7:387490/1‑149 TGAGGCGTGGAAGCTGTCGGACGACTACATCGGCGGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGC > 2:116953/1‑149 AGGCGTGGAAGCTGTCGGACGACTACATCGGCGGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCG > 3:390451/1‑149 AGGCGTGGAAGCTGTCGGACGACTACATCGGCGGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCC < 8:197012/148‑1 GCGTGGAAGCTGTCGGACGACTACATCGGCGGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGG > 2:340054/1‑149 GGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGCTCGCGCTCTCGCGCGCGCTGGGCTACCCGG > 6:167022/1‑149 CCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGGCTCGCGCTCTCGCGCGCGCTGGGCTACCCGGCCTGAGCCGTTAGAC < 5:167022/149‑1 CGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTCCGAGCCGGTCTAACGGCTCAGGCCGGGCTCGCGCTCTCGCGCGCGCTGGGCTACCCGGCCTGAGCCGTTAGACCGGCTC < 1:340054/149‑1 GTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGGCTAACGGCGCAGGCCGGGCTCGCGCTCTCGCGCGCGCTGGGCTACCCGGCCTGAGCCGTTAGACCGGCTCGTAG < 1:306118/148‑1 CAGGCCGGGCTCGCGCTCTCGCGCGCGCTGGGCTACCCGGCCTGAGCCGTTAGACCGGCTCGTAGGTGAAGTAGTCGAAGTCCGCGTAGCAGCCGTCGCCGCTGATGTCCTCGCAGTGCAGGCCCACAAACGCGCCGGTGAAGAAGCCG > 8:345395/1‑149 AGGCCGGGCTCGCGCTCTCGCGCGCGCTGGGCTACCCGGCCTGAGCCGTTAGACCGGCTCGTAGGTGAAGTAGTCGAAGTCCGCGTAGCAGCCGTCGCCGCTGATGTCCTCGCAGTGCAGGCCCACAAACGCGCCGGTGAAGAAGCCGC < 6:18717/149‑1 GCCGGGCTCGCGCTCTCGCGCGCGCTGGGCTACCCGGCCTGAGCCGTTAGACCGGCTCGTAGGTGAAGTAGTCGAAGTCCGCGTAGCAGCCGTCGCCGCTGATGTCCTCGCAGTGCAGGCCCACAAACGCGCCGGTGAAGAAGCCGCGC < 1:240011/149‑1 GCCGGGCTCGCGCTCTCGCGCGCGCTGGGCTACCCGGCCTGAGCCGTTAGACCGGCTCGTAGGTGAAGTAGTCGAAGTCCGCGTAGCAGCCGTCGCCGCTGATGTCCTCGCAGTGCAGGCCCACAAACGCGCCGGTGAAGAAGCCGCGC > 5:396354/1‑149 GCTCGCGCTCTCGCGCGCGCTGGGCTACCCGGCCTGAGCCGTTAGACCGGCTCGTAGGTGAAGTAGTCGAAGTCCGCGTAGCAGCCGTCGCCGCTGATGTCCTCGCAGTGCAGGCCCACAAACGCGCCGGTGAAGAAGCCGCGCCCGCC > 5:348736/1‑149 GTATGAGGCGTGGAAGCTGTCGGACGACTACATCGGCGGGCGCGGCTTCTTCACCGGCGCGTTTGTGGGCCTGCACTGCGAGGACATCAGCGGCGACGGCTGCTACGCGGACTTCGACTACTTCACCTACGAGCCGGTCTAACGGCTCAGGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/288258‑288413‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggccgggCTCGCGCTCTCGCGCGCGCTGGGCTACCCGGCCTGAGCCGTTAGACCGGCTCGTAGGTGAAGTAGTCGAAGTCCGCGTAGCAGCCGTCGCCGCTGATGTCCTCGCAGTGCAGGCCCACAAACGCGCCGGTGAAGAAGCCGCGCCCGCC < NC_000913/288439‑288292 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |