| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 282071 | 33 (0.970) | 8 (0.260) | 8/238 | 2.2 | 17.5% | intergenic (‑88/‑207) | yagA/yagE | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage |
| ? | NC_000913 | = 282106 | 45 (1.450) | intergenic (‑123/‑172) | yagA/yagE | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/281921‑282071‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccaaaggggCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGGGTGTACGGTCCGGGGACATAGTGAACACTTGTTCGGGGACATGGTAGACACTTACAACTAAGGCATAAGAACCCGTTTATGGAGTCGCTTATGCCCT < NC_000913/282106‑281965 CAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAG < 5:115516/148‑1CAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAG > 6:115516/1‑148 ACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGC > 5:35869/1‑148 CAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAA > 6:98276/1‑103 CAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCAATATGTCCCCGGACCGTACACCCCAA < 5:98276/103‑1 GGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGG < 6:35869/149‑1 ATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCC > 8:100004/1‑128 ATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCC < 7:100004/128‑1 tgGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGGGTGTACGGTCCGGGGACATAGTGAACACTTGTTCGG < 8:57889/146‑1 TTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGGGTGTACGGTCCGGGGGCATAGTGAACACTTGTTCGGG > 7:57889/1‑149 ACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTT > 4:52704/1‑97 ACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTT < 3:52704/97‑1 CAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGGGTGTACGGTCCGGGGACATAGT < 7:106425/75‑1 CAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGGGTGTACGGTCCGGGGACATAGT > 8:106425/1‑75 AAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGGGTGTACGGTCCGGGGACATAGTGAACACTTGTTCGGGGACATGGTAGACACTTACAACTAAGGCATAAGAACCCGTTTATGGAGTCGCTTATGCCCT < 7:5222/149‑1 AAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGGGTGTACGGTCCGGGGACATAGTGAACA < 2:17945/78‑1 AAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGGGTGTACGGTCCGGGGACATAGTGAACA > 1:17945/1‑78 CAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/281921‑282071‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccaaaggggCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGGGTGTACGGTCCGGGGACATAGTGAACACTTGTTCGGGGACATGGTAGACACTTACAACTAAGGCATAAGAACCCGTTTATGGAGTCGCTTATGCCCT < NC_000913/282106‑281965 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |