New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 409055NA (NA)8 (0.250) 8/246 2.2 NA noncoding (4/37 nt) REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 409088 NA (NA)noncoding (37/37 nt) REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences

CAGTGAAGCGCGTCACCGGCTTGAGGAAAAACAATGACACAACGTCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGA  >  NC_000913/408914‑409181
                                                                                                                                             |                                                                                                                              
cAGTGAAGCGCGTCACCGGCTTGAGGAAAAACAATGACACAACGTCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggat                                                                                                                         <  2:126904‑M1/149‑8 (MQ=255)
 aGTGAAGCGCGTCACCGGCTTGAGGAAAAACAATGACACAACGTCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATa                                                                                                                        <  8:65610/149‑1 (MQ=255)
               ccGGCTTGAGGAAAAACAATGACACAACGTCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGAcgc                                                                                                                  <  6:119654/141‑1 (MQ=255)
               ccGGCTTGAGGAAAAACAATGACACAACGTCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGAcgc                                                                                                                  >  5:119654/1‑141 (MQ=255)
                     tGAGGAAAAACAATGACACAACGTCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCAT                                                                                                    <  3:135503‑M2/149‑1 (MQ=255)
                        ggAAAAACAATGACACAACGTCCAAGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGAAGGCGTAGCAaacg                                                                                                 <  1:69893‑M2/149‑5 (MQ=255)
                         gAAAAACAATGACACAACGTCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGG                                                                                                <  5:110193‑M2/149‑1 (MQ=255)
                                        aaCGTCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAAt                                                                                  >  3:11747/1‑148 (MQ=255)
                                              cATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTaaa                                                                                         <  4:120435/135‑1 (MQ=255)
                                              cATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTaaa                                                                                         >  3:120435/1‑135 (MQ=255)
                                                           aCAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                                                        <  2:67403/123‑1 (MQ=255)
                                                           aCAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAg                                                                                        >  1:67403/1‑123 (MQ=255)
                                                              gCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGaaaa                                                                                   >  4:57107/1‑125 (MQ=255)
                                                              gCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGaaaa                                                                                   <  3:57107/125‑1 (MQ=255)
                                                                 tAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggatgcgacgcctgccgcgtctt                                                                                                      <  8:131067‑M1/103‑27 (MQ=255)
                                                                 tAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggatgcgacgcctgccgcgtctt                                                                                                      >  7:131067‑M1/1‑77 (MQ=255)
                                                                   aaaCGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCAcc                                                       >  1:122456/1‑148 (MQ=255)
                                                                   aaaCGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCATACgccggatgcgacgcctgccgcgtcttatccggcgtacgaagccacaccag                                                                              <  4:12664‑M1/125‑51 (MQ=255)
                                                                   aaaCGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCATACgccggatgcgacgcctgccgcgtcttatccggcgtacgaagccacaccag                                                                              >  3:12664‑M1/1‑75 (MQ=255)
                                                                     aCGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTaa                                                    >  1:73013/1‑149 (MQ=255)
                                                                       gCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATc                                                  <  4:11747/149‑1 (MQ=255)
                                                                         ataataTTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggatgcgacgcctgccgcgtcttatccgg                                                                                                <  6:110206‑M1/101‑33 (MQ=255)
                                                                         ataataTTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggatgcgacgcctgccgcgtcttatccgg                                                                                                >  5:110206‑M1/1‑69 (MQ=255)
                                                                          taataTTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCtt                                               <  2:73013/149‑1 (MQ=255)
                                                                                 gctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggatgcgacgcctgccgcgtcttatccggcgtacgaa                                                                                        <  2:131118‑M1/101‑41 (MQ=255)
                                                                                 gctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACgccggatgcgacgcctgccgcgtcttatccggcgtacgaa                                                                                        >  1:131118‑M1/1‑61 (MQ=255)
                                                                                 gctgcGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCa                                         <  4:135503/148‑1 (MQ=255)
                                                                                        tAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTg                                  >  7:7143/1‑148 (MQ=255)
                                                                                          taaaTTTTTGCTCGCCGTAGCGTATATTTATATGCCTGGGGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATGCGGCATTATAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATGAGGTTTTGAAt                               <  2:69893/148‑1 (MQ=255)
                                                                                          aaaaTTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGaa                                <  6:110193/148‑1 (MQ=255)
                                                                                                       gCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCa                    <  2:122456/147‑1 (MQ=255)
                                                                                                        ccGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGtt                 >  2:121061/1‑149 (MQ=255)
                                                                                                             gCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTg                                  >  3:87536/1‑127 (MQ=255)
                                                                                                             gCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTg                                  <  4:87536/127‑1 (MQ=255)
                                                                                                               gAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGc                                                                              <  4:41953/81‑1 (MQ=255)
                                                                                                               gAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGc                                                                              >  3:41953/1‑81 (MQ=255)
                                                                                                                     ttATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGc                                                           <  4:25380/94‑1 (MQ=255)
                                                                                                                     ttATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGc                                                           >  3:25380/1‑94 (MQ=255)
                                                                                                                        tatGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGa  <  8:7143/148‑1 (MQ=255)
                                                                                                                             cTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCgtatgaagccacaccaggcatataattattcgctacggcgagcaataatttttagcgcagcaatattatgcgttt                    <  4:12664‑M2/125‑76 (MQ=255)
                                                                                                                             cTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCgtatgaagccacaccaggcatataattattcgctacggcgagcaataatttttagcgcagcaatattatgcgttt                    >  3:12664‑M2/1‑50 (MQ=255)
                                                                                                                                    ggCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGtt                                                                    <  6:142479/70‑1 (MQ=255)
                                                                                                                                       ttCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCgtacgaagccacaccaggcatataattattcgctacggcgagcaataatttttagcgcagc                                  <  2:131118‑M2/101‑62 (MQ=255)
                                                                                                                                       ttCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCgtacgaagccacaccaggcatataattattcgctacggcgagcaataatttttagcgcagc                                  >  1:131118‑M2/1‑40 (MQ=255)
                                                                                                                                             |                                                                                                                              
CAGTGAAGCGCGTCACCGGCTTGAGGAAAAACAATGACACAACGTCCATGGAGCAAGTTACAGCGTAAAACGCATAATATTGCTGCGCTAAAAATTATTGCTCGCCGTAGCGAATAATTATATGCCTGGTGTGGCTTCGTACGCCGGATAAGACGCGGCAGGCGTCGCATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGA  >  NC_000913/408914‑409181

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.