New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 390621358 (1.710)5 (0.150) 5/248 3.1 8.4% coding (355/837 nt) bglG transcriptional antiterminator of the bgl operon
?NC_000913 = 3906234 54 (1.670)coding (334/837 nt) bglG transcriptional antiterminator of the bgl operon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGATAATACGATCACAGGTTGCCATCACCTCAAGA  >  NC_000913/3906066‑3906361
                                                                                                                                                   |                                                                                                                                                    
cGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGCACGCCCAACCGTTTAACAATAATGGTTAACGCTTCTCCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCCGGATATCCCACAGCAAc                                                                                                                                                     >  1:84579/1‑149 (MQ=255)
                       tGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTCGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTg                                                                                                                              >  1:17966/1‑149 (MQ=255)
                           tGGCAATAAAGCCCACTTCATCTTTCGGTAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTg                                                                                                                           >  1:62813/1‑148 (MQ=255)
                                     gCCCACTTCATCTTTCGGTAACTGCCCGCCCAACCTGTTATCAATAATGGTTAACGCTTCATCCCCTAGCTGGAGCTCTTTCGGGTACAGCCGCTGGATATCCCACAGCAACGGGTTTGGCAGCAACACGTTTTGCTGAAAGCGTTTaa                                                                                                                <  7:40945/149‑1 (MQ=255)
                                       ccACTTCATCTTTCGGTAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTg                                                                                                                                               <  4:6277/116‑1 (MQ=255)
                                            tCATCTTTCGGTAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGgcag                                                                                                                                          <  1:153789/116‑1 (MQ=255)
                                            tCATCTTTCGGTAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGgcag                                                                                                                                          >  2:153789/1‑116 (MQ=255)
                                                cTTTCGGTAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGATGGATATCCCACAGCAACGGGATGGGCAGCAACACGATTTGCTGAAAGCGTTTAATCGCAAACTg                                                                                                      >  3:112963/1‑148 (MQ=255)
                                                   tCGGTAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGc                                                                                                    <  2:62813/147‑1 (MQ=255)
                                                     ggTAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTCCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCCGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATg                                                                                                <  2:84579/149‑1 (MQ=255)
                                                       tAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATc                                                                                                              <  1:794/133‑1 (MQ=255)
                                                       tAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATc                                                                                                              >  2:794/1‑133 (MQ=255)
                                                       tAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGt                                                                                              <  2:17966/149‑1 (MQ=255)
                                                             cACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGt                                                                                          >  4:121816/1‑147 (MQ=255)
                                                                gCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTgg                                                                                                     >  7:446/1‑133 (MQ=255)
                                                                gCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTgg                                                                                                     <  8:446/133‑1 (MQ=255)
                                                                gCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGc                                                                                      >  6:100247/1‑148 (MQ=255)
                                                                        gTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGAtata                                                                              >  1:147277/1‑148 (MQ=255)
                                                                         tttATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATc                                                                                                              <  4:32899/115‑1 (MQ=255)
                                                                         tttATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATc                                                                                                              >  3:32899/1‑115 (MQ=255)
                                                                         tttATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATaaa                                                                            <  5:100247/149‑1 (MQ=255)
                                                                           tATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCaa                                                                                                  <  4:40121/125‑1 (MQ=255)
                                                                           tATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCaa                                                                                                  >  3:40121/1‑125 (MQ=255)
                                                                            aTCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGc                                                                                                            >  2:105739/1‑114 (MQ=255)
                                                                            aTCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGc                                                                                                            <  1:105739/114‑1 (MQ=255)
                                                                               aataatGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAAt                                                                                                 <  4:103737/122‑1 (MQ=255)
                                                                               aataatGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAAt                                                                                                 >  3:103737/1‑122 (MQ=255)
                                                                                          aCGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGt                                                                                              >  8:126846/1‑114 (MQ=255)
                                                                                          aCGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGt                                                                                              <  7:126846/114‑1 (MQ=255)
                                                                                           cGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTc                                                          >  7:68890/1‑149 (MQ=255)
                                                                                              ttcttcCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAg                                                                                           <  6:134445/113‑1 (MQ=255)
                                                                                              ttcttcCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAg                                                                                           >  5:134445/1‑113 (MQ=255)
                                                                                                cttcCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAg                                                     >  5:106136/1‑149 (MQ=255)
                                                                                                 ttcCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAgc                                                    <  2:147277/149‑1 (MQ=255)
                                                                                                   actcTATCTGGAACTCTTTCGGGTAAAGCCTCTGGATATACCACAGCAATGGGTTGGGCAGCATCACGTTTTGCTGAAAGCGTTTAATAGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAg                                                     <  4:112963/143‑1 (MQ=255)
                                                                                                     ccTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTa                                                                                        <  8:41237/109‑1 (MQ=255)
                                                                                                     ccTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTa                                                                                        >  7:41237/1‑109 (MQ=255)
                                                                                                             gAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCATGCGCt                                         >  2:30750/1‑148 (MQ=255)
                                                                                                               aCTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTa                                        >  5:9009/1‑147 (MQ=255)
                                                                                                                   tttCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTc                                                >  8:24120/1‑135 (MQ=255)
                                                                                                                   tttCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTc                                                <  7:24120/135‑1 (MQ=255)
                                                                                                                      cGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGata                                <  6:106136/148‑1 (MQ=255)
                                                                                                                        ggTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAgcgc                                                  >  3:122709/1‑128 (MQ=255)
                                                                                                                        ggTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAgcgc                                                  <  4:122709/128‑1 (MQ=255)
                                                                                                                                cGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGATAATACGATca                       >  5:92532/1‑147 (MQ=255)
                                                                                                                                 gCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGATAATACGATCACAg                    >  8:92567/1‑149 (MQ=255)
                                                                                                                                     gATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGATAATACGATCACAGGTTg                <  3:121816/149‑1 (MQ=255)
                                                                                                                                           ccACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTaaa                                      >  6:67529/1‑121 (MQ=255)
                                                                                                                                           ccACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTaaa                                      <  5:67529/121‑1 (MQ=255)
                                                                                                                                             acaGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATg                                                                                                >  7:78438/1‑61 (MQ=255)
                                                                                                                                             acaGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATg                                                                                                <  8:78438/61‑1 (MQ=255)
                                                                                                                                             acaGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGATAATACGATCACAGGTTGCCa             >  6:144856/1‑144 (MQ=255)
                                                                                                                                             acaGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGATAATACGATCACAGGTTGCCa             <  5:144856/144‑1 (MQ=255)
                                                                                                                                              caGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGATAATACGATCATAgg                   <  4:29259/137‑1 (MQ=255)
                                                                                                                                              caGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGATAATACGATCATAgg                   >  3:29259/1‑137 (MQ=255)
                                                                                                                                                 cAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGATAATACGATCACAGGTTGCCATCACCTCaa    <  6:92532/149‑1 (MQ=255)
                                                                                                                                                   aCGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATCCTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGATAATACGATCACAGGTTGCCATCACCTCAaga  <  8:68890/149‑1 (MQ=255)
                                                                                                                                                   aCGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCGTGCGCTAAAGAGATAATACGATCACAGGTTGCCATCACCTCAaga  <  1:30750/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
CGCTCATTTGGGCACTGACCAGATGCATGGCAATAAAGCCCACTTCATCTTTCGGTAACTGCACGCCCAACCGTTTATCAATAATGGTTAACGCTTCTTCCCCTAGCTGGAACTCTTTCGGGTAAAGCCGCTGGATATCCCACAGCAACGGGTTGGGCAGCAACACGTTTTGCTGAAAGCGTTTAATCGCAAACTGGCAATGGTCAGTTAGCGAGATATAAATACTGTCCTGTAATTTTCCCAAGCGCTCCTGCGCTAAAGAGATAATACGATCACAGGTTGCCATCACCTCAAGA  >  NC_000913/3906066‑3906361

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.