New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4266888 =	NA (NA)	4 (0.120)	4/246	3.4	NA	noncoding (1/97 nt)	RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	4266918 =	NA (NA)					noncoding (31/97 nt)	RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

ATTTTATGGGGCGAAGGTTTGCCCGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTAATTGCCGT  >  NC_000913/4266748‑4267028                                                                                                                                             |                                                                                                                                             aTTTTATGGGGCGAAGGTTTGCCCGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGATATACGTGGAGTAATCGTTCTGTAAGATTTGATTGTCTGTGCCGGATgc                                                                                                                                      >  8:71152/1‑149 (MQ=255)      aTGGGGCGAAGGTTTGCCCGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGt                                                                                                                                 >  2:76528/1‑149 (MQ=255)          ggCGAAGGTTTGCCCGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAAt                                                                                                                             <  1:76528/149‑1 (MQ=255)          ggCGAAGGTTTGCCCGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAAt                                                                                                                             <  8:54200/149‑1 (MQ=255)           gCGAAGGTTTGCCCGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGaa                                                                                                                              >  6:42578/1‑147 (MQ=255)           gCGAAGGTTTGCCCGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGaa                                                                                                                              <  5:42578/147‑1 (MQ=255)             gAAGGTTTGCCCGTAGAACGTAGCGCTGACATGACGAAAGTCAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGcc                                                                                                                          <  8:118985/149‑1 (MQ=255)               aGGTTTGCCCGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCt                                                                                                                         >  4:84761/1‑148 (MQ=255)                 gTTTGCCCGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTAt                                                                                                                      <  6:80514/149‑1 (MQ=255)                    tGCCCGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATcc                                                                                                                    <  3:84761/148‑1 (MQ=255)                           aGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATgcggc                                                                                                                                   >  1:8028/1‑126 (MQ=255)                           aGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATgcggc                                                                                                                                   <  2:8028/126‑1 (MQ=255)                              aCGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATaaaa                                                                                                         <  7:71152/149‑1 (MQ=255)                                         aaaTGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATAAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAAtt                                                                                              >  6:138983/1‑149 (MQ=255)                                              aCGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAAt                                                                                          >  6:101541/1‑148 (MQ=255)                                                               cGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATAAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCAt                                                                        <  5:138983/149‑1 (MQ=255)                                                                gAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTaa                                                                                                   >  5:64642/1‑121 (MQ=255)                                                                gAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTaa                                                                                                   <  6:64642/121‑1 (MQ=255)                                                                               cTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCg                                                        >  3:110819/1‑149 (MQ=255)                                                                                    ttCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCct                                                   >  5:38626/1‑149 (MQ=255)                                                                                     tCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGc                                                                                                                 <  6:18553/86‑1 (MQ=255)                                                                                        aGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTgg                                               >  6:77192/1‑149 (MQ=255)                                                                                              gcgATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGAt                                          <  4:110819/148‑1 (MQ=255)                                                                                              gcgATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATg                                         >  3:104970/1‑149 (MQ=255)                                                                                                    aaaTACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGt                                    <  5:77192/148‑1 (MQ=255)                                                                                                      aTACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTg                                 <  5:101541/149‑1 (MQ=255)                                                                                                          gTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGt                                                       >  8:59951/1‑123 (MQ=255)                                                                                                          gTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGt                                                       <  7:59951/123‑1 (MQ=255)                                                                                                           tGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCAt                             >  5:35601/1‑148 (MQ=255)                                                                                                                  aTCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCa                     <  6:35601/149‑1 (MQ=255)                                                                                                                   tCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCAc                    >  2:142808/1‑149 (MQ=255)                                                                                                                   tCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCAc                    >  7:43675/1‑149 (MQ=255)                                                                                                                           tAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGt               <  8:43675/146‑1 (MQ=255)                                                                                                                           tAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGc            >  1:155237/1‑149 (MQ=255)                                                                                                                               atTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAg                                                            >  8:79935/1‑97 (MQ=255)                                                                                                                               atTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAg                                                            <  7:79935/97‑1 (MQ=255)                                                                                                                                tttGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTAAtt       >  6:13425/1‑149 (MQ=255)                                                                                                                                tttGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTAAtt       >  8:66251/1‑149 (MQ=255)                                                                                                                                     ttGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTAATTGCCGt  <  1:142808/149‑1 (MQ=255)                                                                                                                                        tCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATg                                                                       >  2:133460/1‑77 (MQ=255)                                                                                                                                        tCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATg                                                                       <  1:133460/77‑1 (MQ=255)                                                                                                                                          tgtgCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTc                               >  6:56045/1‑115 (MQ=255)                                                                                                                                          tgtgCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTc                               <  5:56045/115‑1 (MQ=255)                                                                                                                                             |                                                                                                                                             ATTTTATGGGGCGAAGGTTTGCCCGTAGAACGTATCGCTGAAATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTGTTGCTAATTGCCGT  >  NC_000913/4266748‑4267028

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.