Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)113 (1.310) 65/282 0.3 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)107 (1.240) 62/282 0.3 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

Only 100 of 204 total aligned reads displayed.

AGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAAT  >  NC_000913/1979339‑1979634
                                                                                                                                                   |                                                                                                                                                    
aaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                      <  1:295369‑M1/1‑1 (MQ=255)
aaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                      >  2:35129‑M1/148‑148 (MQ=255)
aaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                      >  2:270237‑M1/148‑148 (MQ=255)
aaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt                                                                                                                                                     >  1:341900‑M1/148‑149 (MQ=255)
 aaactggggataacgccttaattggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa                                                                                                                                                    >  5:230727‑M1/147‑149 (MQ=255)
   ggtggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaagtcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                      >  2:175719‑M1/145‑145 (MQ=255)
       gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaaa                                                                                                                                              >  5:42586‑M1/141‑149 (MQ=255)
       gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgaatgagtcagccgagaagaatttccccgcttattagaaccttccCTAATTaaa                                                                                                                                              <  7:260820‑M1/9‑1 (MQ=255)
       gggataacgccttaaatggcgaagaaacggtcgaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtccgccgagaagaatttccccgctgattcgcaccttccCTAATTaaa                                                                                                                                              <  1:193945‑M1/9‑1 (MQ=255)
         aaaTGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggt                                                                                                                                            <  1:207199‑M1/149‑8 (MQ=255)
               gccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAt                                                                                                                                                  <  5:304111‑M1/5‑1 (MQ=255)
               gccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAt                                                                                                                                                  >  6:304111‑M1/133‑137 (MQ=255)
                  ttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaaag                                                                                                                                   <  4:6672‑M1/20‑1 (MQ=255)
                    aaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAgg                                                                                                                                  >  3:225178‑M1/128‑148 (MQ=255)
                     aatggagaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGc                                                                                                                                 >  7:338085‑M1/127‑148 (MQ=255)
                     aataatCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtcc                                                                                                                                <  4:297969‑M1/149‑20 (MQ=255)
                       tggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGaaaggaaa                                                                                                                               <  3:46747‑M1/24‑4 (MQ=255)
                           gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAAt                                                                                                                           <  1:220898‑M1/28‑1 (MQ=255)
                           gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAAt                                                                                                                           <  6:214736‑M1/28‑1 (MQ=255)
                            gAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatat                                                                                                                         <  5:75133‑M1/149‑27 (MQ=255)
                             agaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCaa                                                                                                                        >  1:330731‑M1/119‑149 (MQ=255)
                             agaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCaa                                                                                                                        >  8:265288‑M1/119‑149 (MQ=255)
                               aTGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgag                                                                                                                      <  3:235456‑M1/149‑30 (MQ=255)
                                  ggATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatc                                                                                                                   <  4:12300‑M1/149‑33 (MQ=255)
                                  cggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaa                                                                                                                   >  7:103084‑M1/114‑149 (MQ=255)
                                   ggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaat                                                                                                                  <  3:275962‑M1/37‑1 (MQ=255)
                                      ctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgt                                                                                                                <  7:16731‑M1/39‑1 (MQ=255)
                                       ttGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAACCAGCCCCTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtt                                                                                                              >  6:260398‑M1/1‑112 (MQ=255)
                                         aataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaat                                                                                                            >  7:298779‑M1/107‑149 (MQ=255)
                                         aataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaat                                                                                                            <  6:162359‑M1/43‑1 (MQ=255)
                                         aataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaat                                                                                                            >  5:256358‑M1/107‑149 (MQ=255)
                                         aataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaat                                                                                                            <  3:102018‑M1/43‑1 (MQ=255)
                                              gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAAt                                                                                                       <  2:261562‑M1/48‑1 (MQ=255)
                                                tgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATc                                                                                                                          <  6:294391‑M1/29‑1 (MQ=255)
                                                gTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctg                                                                                                     >  6:38679‑M1/1‑103 (MQ=255)
                                                  attcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGttt                                                                                                   <  6:169531‑M1/52‑1 (MQ=255)
                                                   ttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGtttt                                                                                                  >  5:19418‑M1/97‑149 (MQ=255)
                                                     caaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTa                                                                                                 >  3:6672‑M1/95‑148 (MQ=255)
                                                      aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACa                                                                                               <  6:354998‑M1/56‑1 (MQ=255)
                                                         gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACatat                                                                                            >  2:335329‑M1/91‑149 (MQ=255)
                                                                  ggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCAc                                                                                   >  8:16731‑M1/82‑149 (MQ=255)
                                                                  ggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCAc                                                                                   >  8:11494‑M1/82‑149 (MQ=255)
                                                                     gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTg                                                                                <  2:40147‑M1/71‑1 (MQ=255)
                                                                      aatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                                                                                   <  7:215803‑M1/129‑49 (MQ=255)
                                                                       atcatcTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatca                                                                              <  3:151202‑M1/149‑70 (MQ=255)
                                                                        tcatcTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat                                                                             <  7:138775‑M1/149‑71 (MQ=255)
                                                                         aaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGttt                                                                             <  1:14132‑M1/74‑1 (MQ=255)
                                                                          atcTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                           <  1:63204‑M1/149‑73 (MQ=255)
                                                                          atcTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                           <  8:193043‑M1/149‑73 (MQ=255)
                                                                          atcTGCTATAAATAATCACTCTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                           <  1:104119‑M1/149‑73 (MQ=255)
                                                                              ggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattctcaaataccCTAATTAAATACAAAGAAAGGCAACAATCAACATAATTTTAATTAAATGTTTTACATATATTAACAACTTGTTAAATGCg                                                                       <  3:346359‑M1/80‑1 (MQ=255)
                                                                                 tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCg                                                                       <  1:239826‑M1/80‑1 (MQ=255)
                                                                                   aaacattaagaaattaaatgacttagtctgcagagaagaatttccgcgcttattggcaccttccCTAATTAAATACAAAGAAAGGCTACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGga                                                                     >  5:359657‑M1/65‑146 (MQ=255)
                                                                                       atgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAg                                                              >  7:82332‑M1/61‑149 (MQ=255)
                                                                                       atgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAg                                                              >  1:40147‑M1/61‑149 (MQ=255)
                                                                                           aCTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgccatctggagccatagaacagggttcatcatgagtcatcaacttacctt                                                           <  7:70693‑M1/148‑89 (MQ=255)
                                                                                             tttCATGCAATACCAGATAAGCTATTTTTAAACAGCCACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgc                                                        >  4:128394‑M1/1‑58 (MQ=255)
                                                                                             tttCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgc                                                        >  6:239414‑M1/1‑58 (MQ=255)
                                                                                               atgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTAt                                                      <  8:345319‑M1/97‑1 (MQ=255)
                                                                                                tgaaatgactgagtcagcctagaagaatttcccagcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTAtt                                                     >  7:351609‑M1/52‑149 (MQ=255)
                                                                                                  aaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCg                                                                       >  2:231150‑M1/50‑129 (MQ=255)
                                                                                                  aaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTAtttt                                                   <  7:358720‑M1/100‑1 (MQ=255)
                                                                                                   aatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTc                                                  >  2:14132‑M1/49‑149 (MQ=255)
                                                                                                   aatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTc                                                  >  1:70029‑M1/49‑149 (MQ=255)
                                                                                                   aatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTc                                                  >  3:323656‑M1/49‑149 (MQ=255)
                                                                                                   aatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTc                                                  >  5:162359‑M1/49‑149 (MQ=255)
                                                                                                    cAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata                                                                                             >  7:185545‑M1/1‑51 (MQ=255)
                                                                                                           agtcagccgagaagaatttccccgcttattcgccccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAAt                                           <  5:96581‑M1/108‑1 (MQ=255)
                                                                                                            gATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcag                                         <  3:246482‑M1/149‑107 (MQ=255)
                                                                                                            gATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcag                                         <  7:57814‑M1/149‑107 (MQ=255)
                                                                                                             tcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTa                                         <  5:285131‑M1/110‑1 (MQ=255)
                                                                                                             aTAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcag                                         >  8:231559‑M1/1‑42 (MQ=255)
                                                                                                               agccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACAt                                      <  4:219465‑M1/113‑1 (MQ=255)
                                                                                                                   gagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTg                                   <  8:49194‑M1/116‑1 (MQ=255)
                                                                                                                    agaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGa                                  <  8:108547‑M1/117‑1 (MQ=255)
                                                                                                                    agaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGa                                  <  8:206281‑M1/117‑1 (MQ=255)
                                                                                                                    aTTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagc                                 >  2:51260‑M1/1‑35 (MQ=255)
                                                                                                                      aataatttccccgcttattcgcaacttccCTAATTAAATACAAAGAAACGCTACAATTATCTTAATGTTAATGAAATGTTTTACATATATTATCCACTTGTTTTATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAAt                               >  3:260500‑M1/30‑149 (MQ=255)
                                                                                                                         aatttccccgcttattcgcaacttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATtat                            >  4:83937‑M1/27‑149 (MQ=255)
                                                                                                                          aaaCAGACACTTACCCCACAAGAAACTAAggaaggtgctaacaagtacctgttatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatgaagttaccttcgccgacagtgaattcagctgtaagcgccgt                            <  4:258563‑M1/148‑120 (MQ=255)
                                                                                                                          aaaCAGAAACTTACCGCACATCAAACTAAggaaggtgcgaacaaggccctgatatgatatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt                            <  4:267335‑M1/148‑120 (MQ=255)
                                                                                                                             cAGACACTTACCGCACAACAAACTAAggaagctgcgaacaagtccctgatatgagatcatgtttgtcatctggagacatcgaaccgtgttcatcatgagtcatcaacttaccttcgccgaaagtgaattcagcagtaagcgccgtcaga                        <  5:141787‑M1/149‑124 (MQ=255)
                                                                                                                              aGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                           >  6:85105‑M1/1‑25 (MQ=255)
                                                                                                                              aGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                           <  5:85105‑M1/97‑73 (MQ=255)
                                                                                                                                ccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAc                                                                                      <  8:307787‑M1/65‑1 (MQ=255)
                                                                                                                                    ttACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaca                                                   <  2:197803‑M1/115‑97 (MQ=255)
                                                                                                                                      aCCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatct                                                                                                      >  2:300530‑M1/1‑17 (MQ=255)
                                                                                                                                      aCCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagagcatgtttggcagctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgccagtgaattcagcagtaagcgccgtcagaccagaaa                 <  5:260398‑M1/147‑131 (MQ=255)
                                                                                                                                          cacaACAAACTAAggaaggtgcgaacaagtccctgatttgagatcatgtttgtcatctggatccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagat           >  6:334568‑M1/1‑13 (MQ=255)
                                                                                                                                           acaacaAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaa                                                                   >  8:59846‑M1/1‑12 (MQ=255)
                                                                                                                                             aacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattt         >  4:334220‑M1/1‑10 (MQ=255)
                                                                                                                                             aacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccga                                                     <  2:246328‑M1/104‑95 (MQ=255)
                                                                                                                                             aacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccga                                                     >  1:246328‑M1/1‑10 (MQ=255)
                                                                                                                                              acaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc       <  3:128394‑M1/149‑141 (MQ=255)
                                                                                                                                               caaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttct      >  4:35381‑M1/1‑8 (MQ=255)
                                                                                                                                                 cgcTATTTAAATTAATATAAAGTCAACTATCATCTTAATCTTAATGATATGTTTTACATATATTAACCATATTTTTAATGATTTGAATCAGTTCTCTATTATCTAATAATTAGATTTGAAATTTTATGATCACTGGCTGTtattgttt     <  4:346359/146‑1 (MQ=255)
                                                                                                                                                  aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttctt     <  4:193290‑M1/147‑143 (MQ=255)
                                                                                                                                                  aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttctt     >  3:193290‑M1/1‑5 (MQ=255)
                                                                                                                                                   cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtga                                               <  6:136618‑M1/104‑101 (MQ=255)
                                                                                                                                                   cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggatcctcatgagtcatcaacataccttccccgacagtgaattcagcagtaagagccgtcagaccagaaaagacatttacttgtc  >  5:33652‑M1/1‑4 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
AGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAAT  >  NC_000913/1979339‑1979634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.