| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2737618 = | 55 (1.630) | 4 (0.130) | 4/238 | 3.1 | 7.6% | coding (20/48 nt) | pheL | pheA gene leader peptide |
| ? | NC_000913 | 2737685 = | 47 (1.530) | intergenic (+39/‑60) | pheL/pheA | pheA gene leader peptide/chorismate mutase and prephenate dehydratase, P‑protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCAGCGCCAGTAACGGGTTTTCCGATGTCATAGTGTTGCCTTTTTGTTATCAATAAAAAAGGCCCCCCGATTTGGGAGGCCTTATTGTTCGTCTTCGCATTCTGTTTCACACGACGAAACGCCTCCCATTCAGGGGAAGGTAAAAAAGAATGCGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2737775‑2737618‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaatgcgaagaCGAACAATAAGGCCTCCCAAATCGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGGATGAAAAA > NC_000913/2737685‑2737804 GCAGCGCCAGTAACGGGTTTTCCGATGTCATAGTGTTGCCTTTTTGTTATCAATAAAAAAGGCCCCCCGATTTGGGAGGCCTTATTGTTCGTCTTCGCATTCTGTTTCACACGACGAAACGCCTCCCATTCAGGGGAAGGTAAAAAAG > 8:123470/1‑148 AGCGCCAGTAACGGGTTTTCCGATGTCATAGTGTTGCCTTTTTGTTATCAATAAAAAAGGCCCCCCGATTTGGGAGGCCTTATTGTTCGTCTTCGCATTCTGTTTCACACGACGAAACGCCTCCCATTCAGGGGAAGGTAAAAAAGAAT > 2:43706/1‑149 AGCGCCAGTAACGGGTTTTCCGATGTCATAGTGTTGCCTTTTTGTTATCAATAAAAAAGGCCCCCCGATTTGGGAGGCCTTATTGTTCGTCTTCGCATTCTGTTTCACACGACGAAACGCCTCCCATTCAGGGGAAGGTAAAAAAGAAT > 3:108700/1‑149 TTTTTGTTATCAATAAAAAAGGCCCCCCGATTTGGGAGGCCTTATTGTTCGTCTTCGCATTCTGTTTCACACGACGAAACGCCTCCCATTCAGGGGAAGGTAAAAAAGAATG < 7:48875/112‑1 TTTTTGTTATCAATAAAAAAGGCCCCCCGATTTGGGAGGCCTTATTGTTCGTCTTCGCATTCTGTTTCACACGACGAAACGCCTCCCATTCAGGGGAAGGTAAAAAAGAATG > 8:48875/1‑112 CTTCGCATTCTGTTTCACACGACGAAACGCCTCCCATTCAGGGGAAGGTAAAAAAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACT > 6:123086/1‑149 GCATTCTGTTTCACACGACGAAACGCCTCCCATTCAGGGGAAGGTAAAAAAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAA > 3:60604/1‑134 GCATTCTGTTTCACACGACGAAACGCCTCCCATTCAGGGGAAGGTAAAAAAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAA < 4:60604/134‑1 CAGGGGAAGGTAAAAAAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGGATGAAAAA < 5:123086/148‑1 GCAGCGCCAGTAACGGGTTTTCCGATGTCATAGTGTTGCCTTTTTGTTATCAATAAAAAAGGCCCCCCGATTTGGGAGGCCTTATTGTTCGTCTTCGCATTCTGTTTCACACGACGAAACGCCTCCCATTCAGGGGAAGGTAAAAAAGAATGCGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2737775‑2737618‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaatgcgaagaCGAACAATAAGGCCTCCCAAATCGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGGATGAAAAA > NC_000913/2737685‑2737804 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |