New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 276801028 (0.830)6 (0.190) 6/248 2.6 16.8% coding (301/864 nt) yfjP CP4‑57 prophage; 50S ribosome‑binding GTPase family protein
?NC_000913 = 2768033 33 (1.030)coding (324/864 nt) yfjP CP4‑57 prophage; 50S ribosome‑binding GTPase family protein
Rejected: Frequency below/above cutoff threshold.

GTGAAGTATCGCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2767885‑2768010
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttcgcgGTACAGCGCAGCATACTCGGTATCGCGAACGCCACTTTCGCCCACGCCGGGCAGATCCACGATGGTCATAAAGTGTTCTCCAATCTGCAGGCGAAAGCGTAAAGGATCACGTGTACAGGCCGCTACATCGCTGACCGGCGATA  <  NC_000913/2768033‑2767891
                                                                                                                                                                                                                                                                             
GTGAAGTATCGCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGC                                                                                                                                                  <  5:44483/125‑1
GTGAAGTATCGCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGC                                                                                                                                                  >  6:44483/1‑125
                     ATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCG                                                                                                                                                   >  2:166296/1‑103
                                              TTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGGTACAGCGCAGCATACTCGGTATCGCGAA                                                                                                                    >  1:105822/1‑109
                                              TTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGGTACAGCGCAGCATACTCGGTATCGCGAA                                                                                                                    <  2:105822/109‑1
                                                             GCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGGTACAGCGCAGCATACTCGGTATCGCGAACGCC                                                                                                                <  5:11510/98‑1
                                                             GCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGGTACAGCGCAGCATACTCGGTATCGCGAACGCC                                                                                                                >  6:11510/1‑98
                                                                 ATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGGTACAGCGCAGCATACTCGGTATCGCGAACGCCA                                                                                                               >  7:52085/1‑95
                                                                 ATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGGTACAGCGCAGCATACTCGGTATCGCGAACGCCA                                                                                                               <  8:52085/95‑1
                                                                                                                        TTCGCGGTACAGCGCAGCATACTCGGTATCGCGAACGCCACTTTCGCCCACGCCGGGCAGATCCACGATGGTCATAAAGTGTTCTCCAATCTGCAGGCGAAAGCGTAAAGGATCACGTGTACAGGCCGCTACATCGCTGACCGGCGATA  <  7:11437/149‑1
                                                                                                                        TTCGCGGTACAGCGCAGCATACTCGGTATCGCGAACGCCACTTTCGCCCACGCCGGGCAGATCCACGATGGTCATAAAGTGTTCTCCAATCTGCAGGCGAAAGCGTAAAGGATCACGTGTACAGGCCGCTACATCGCTGACCGGCGATA  >  7:41038/1‑149
                                                                                                                             GGTACAGCGCAGCATACTCGGTATCGCGAACGCCACTTTCGCCCACGCCGGGCAGATCCACGATGGTCATAAAGTGTTCTCCAATCTGCAGGCGAAAGCGTAAAGGATCACGTGTACAGGCCGCTACATCGCTGACCGGCGATA  >  7:21583/1‑144
                                                                                                                             GGTACAGCGCAGCATACTCGGTATCGCGAACGCCACTTTCGCCCACGCCGGGCAGATCCACGATGGTCATAAAGTGTTCTCCAATCTGCAGGCGAAAGCGTAAAGGATCACGTGTACAGGCCGCTACATCGCTGACCGGCGATA  <  8:21583/144‑1
                                                                                                                                                                                                                                                                             
GTGAAGTATCGCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2767885‑2768010
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttcgcgGTACAGCGCAGCATACTCGGTATCGCGAACGCCACTTTCGCCCACGCCGGGCAGATCCACGATGGTCATAAAGTGTTCTCCAATCTGCAGGCGAAAGCGTAAAGGATCACGTGTACAGGCCGCTACATCGCTGACCGGCGATA  <  NC_000913/2768033‑2767891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.