New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3476573 =	28 (0.830)	6 (0.200)	6/238	2.5	18.9%	intergenic (‑133/+34)	yheO/fkpA	putative PAS domain‑containing DNA‑binding transcriptional regulator/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)
	?	NC_000913	3476599 =	26 (0.850)					intergenic (‑159/+8)	yheO/fkpA	putative PAS domain‑containing DNA‑binding transcriptional regulator/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)
Rejected: Frequency below/above cutoff threshold.

CTTTTCAGGAGCCTGTCGTTAACTTTTCAGGGCAGGCTCATTAATGATGCGGGTAACTAAATTAATACAGCGGAGGTTCCGCTTTCCAGCACTAATTATATCCGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGGCGCTGGTTTCACATCCAGCAGCTCTACGTCAAACACCAGGGTAGAATTCGGTGGGATCCCCGGAACACCCGCTTTGCCG  >  NC_000913/3476455‑3476745                                                                                                                                                 |                                                                                                                                                   cTTTTCAGGAGCCTGTCGTTAACTTTTCAGGGCAGGCTCATTAATGATGCGGGTAACTAAATTAATACAGCGGAGGTTCCGCTTTCCAGCACTAATTATATCCGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTaa                                                                                                                                                >  8:89052/1‑149 (MQ=255) cTTTTCAGGAGCCTGTCGTTAACTTTTCAGGGCAGGATCATTAATGATGCGGGTAACTAAATTAATACAGCGGAGGTTCCGCTTTCCAGCACTAATTATATCCGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTaa                                                                                                                                                <  8:14066/149‑1 (MQ=255)  ttttCAGGAGCCTGTCGTTAACTTTTCAGGGCAGGCTCATTAATGATGCGGGTAACTAAATTAATACAGCGGAGGTTCCGCTTTCCAGCACTAATTATATCCGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAAt                                                                                                                                               >  3:40839/1‑149 (MQ=255)       aGGAGCCTGTCGTTAACTTTTCAGGGCAGGCTCATTAATGATGCGGGTAACTAAATTAATACAGCGGAGGTTCCGCTTTCCAGCACTAATTATATCCGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTa                                                                                                                                          >  5:124586/1‑149 (MQ=255)       aGGAGCCTGTCGTTAACTTTTCAGGGCAGGCTCATTAATGATGCGGGTAACTAAATTAATACAGCGGAGGTTCCGCTTTCAAGCACTAATTATATCAGGCCTGTAATAAAAAAACCTCCGCCTGGTCATGCGGCGGTTCTTAATGCTTa                                                                                                                                          >  8:40390/1‑149 (MQ=255)            ccTGTCGTTAACTTTTCAGGGCAGGCTCATTAATGATGCGGGTAACTAAATTAATACAGCGGAGGTTCCGCTTTCCAGCACTAATTATATCCGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTAttttt                                                                                                                                     <  4:40839/149‑1 (MQ=255)             cTGTCGTTAACTTTTCAGGGCAGGCTCATTAATGATGCGGGTAACTAAATTAATACAGCGGAGGTTCCGCTTTCCAGCACTAATTATATCCGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTAtttttt                                                                                                                                    <  6:124586/149‑1 (MQ=255)                tCGTTAACTTTTCAGGGCAGGCTCATTAATGATGCGGGTAACTAAATTAATACAGCGGAGGTTCCGCTTTCCAGCACTAATTATATCCGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGc                                                                                                                                 <  8:136195/149‑1 (MQ=255)                  tttgacgtagagctgctggatgtgaaaccagcgccgaaggctgatgcaaagccggaagctgatgcgaaagccgcagattctgctaaaaaataagcattaagAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAg                                                                                                                                  <  1:75994‑M1/45‑1 (MQ=255)                           gagctgctggatgtgaaaccagcgccgaaggctgatgcaaagccggaagctgatgcgaaagccgcagattctgctaaaaaataagcattaagAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCg                                                                                                                       >  2:75994‑M1/93‑148 (MQ=255)                                                  gccgaaggctgatgcaaagccggaagctgatgcgaaagccgcagattctgctaaaaaataagcattaagAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGc                                                                                                               <  5:34789‑M1/64‑1 (MQ=255)                                                  gccgaaggctgatgcaaagccggaagctgatgcgaaagccgcagattctgctaaaaaataagcattaagAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGc                                                                                                               >  6:34789‑M1/70‑133 (MQ=255)                                                    ggTAACTAAATTAATACATCGGAGGTTCCGCTTTCCAGCACTAATTATATCCGGCCTTTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGc                                                                                             <  7:40390/149‑1 (MQ=255)                                                          tAAATTAATACAGCGGAGGTTCCGCTTTCCAGCACTAATTATATCCGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTAAATGCTTATTTATTAGCAGAATCTGCGGCATTCGCATCACCTTCCGCCTTTGCATCAGc                                                                                       >  8:74805/1‑149 (MQ=255)                                                                 aaagccggaagctgatgcgaaagccgcagattctgctaaaaaataagcattaagaaccgccgcctgaccaggcggcggttCTTAATGCTTATTTTTTAGCAGAATCTGc                                                                                                                        >  3:32654‑M2/81‑109 (MQ=255)                                                                 aaagccggaagctgatgcgaaagccgcagattctgctaaaaaataagcattaagaaccgccgcctgaccaggcggcggttCTTAATGCTTATTTTTTAGCAGAATCTGc                                                                                                                        <  4:32654‑M2/29‑1 (MQ=255)                                                                 aTACAGCGGAGGTTCCGCTTTCCAGCACTAATTATATCCGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGgc                                                                                >  4:19942/1‑149 (MQ=255)                                                                   aCAGCGGAGGTTCCGCTTTCCAGCACTAATTATATCCGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGgcgc                                                                              >  2:150110/1‑149 (MQ=255)                                                                     aGCGGAGGTTCCGCTTTCCAGCACTAATTATATCCGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGGCGCTg                                                                            <  7:89052/149‑1 (MQ=255)                                                                         gAGGTTCCGCTTTCCAGCACTAATTATATCCGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGGCGCTGGttt                                                                        <  8:82791/149‑1 (MQ=255)                                                                            gTTCCGCTTTCCAGCACTAATTATATCCGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGGCGCTGGTTTcac                                                                     <  1:150110/149‑1 (MQ=255)                                                                            gTTCCGCTTTCCAGCACTAATTATATCCGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGGCGCTGGTTTcac                                                                     <  7:74805/149‑1 (MQ=255)                                                                              tCCGCTTTCCAGCACTAATTATATCCGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCgg                                                                                                   >  4:41170/1‑117 (MQ=255)                                                                              tCCGCTTTCCAGCACTAATTATATCCGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCgg                                                                                                   <  3:41170/117‑1 (MQ=255)                                                                                 gcgaaagccgcagattctgctaaaaaataagcattaagaaccgccgcctgaccaggcggcggttCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGgc                                                                                <  5:34789‑M2/69‑1 (MQ=255)                                                                                 gcgaaagccgcagattctgctaaaaaataagcattaagaaccgccgcctgaccaggcggcggttCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGgc                                                                                >  6:34789‑M2/65‑133 (MQ=255)                                                                                      acAGCACTAATTATATCCGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTc                                                                                   >  6:132277/2‑125 (MQ=255)                                                                                         cgcagattctgctaaaaaataagcattaagaaccgccgcctgaccaggcggcggttCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGGCGCTGGTTTCACATCCAGCAGctc                                                         >  2:75994‑M2/57‑148 (MQ=255)                                                                                          gcagattctgctaaaaaataagcattaagAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCttt                                                                                               <  4:32654‑M1/80‑1 (MQ=255)                                                                                          gcagattctgctaaaaaataagcattaagAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCttt                                                                                               >  3:32654‑M1/30‑109 (MQ=255)                                                                                            cTAATTATATCCGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGGCGCTGGTTTCACATCCAGCAGCTCTACg                                                     >  1:55935/1‑149 (MQ=255)                                                                                               aTTATATCCGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGGCGCTGGTTTCACATCCAGCAGCTCTACGTc                                                   >  4:4110/1‑148 (MQ=255)                                                                                               aTTATATCCGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGGCGCTGGTTTCACATCCAGCAGCTCTACGTCa                                                  <  3:19942/149‑1 (MQ=255)                                                                                                    ctaaaaaataagcattaagaaccgccgcctgaccaggcggcggttCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGGCGCTGGTTTCACATCCAGCAGCTCTACGTCaaa                                                <  1:75994‑M2/101‑1 (MQ=255)                                                                                                       cGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGGCGCTGGTTTCACATCCAGCAGCTCTACg                                                     <  4:93925/138‑1 (MQ=255)                                                                                                       cGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGGCGCTGGTTTCACATCCAGCAGCTCTACg                                                     >  3:93925/1‑138 (MQ=255)                                                                                                           cTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGc                                                                                       >  6:58375/1‑100 (MQ=255)                                                                                                           cTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGGCGCTGGTTTCACATCCAGCAGCTCTACGTCAAACACCAGGGTa                                      <  8:73572/149‑1 (MQ=255)                                                                                                                            CCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGGCGCTGGTTTCACATCCAGCAGCTCTACGTCAAACACCAGGGTAGAATTCGGTGGGATccc                     >  2:55935‑M1/1‑149 (MQ=255)                                                                                                                             CGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGGCGCTGGTTTCACATCCAGCAGCTCTACGTCAAACACCAGGGTAGAATTCGGTGGGATcccc                    >  3:4110‑M1/1‑149 (MQ=255)                                                                                                                                             ggttCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGGCGCTGGTTTCACATCCAGCAGCTCTACGTCAAACACCAGGGTAGAATTCGGTGGGATCCCCGGAACACCCGCttt      >  4:9854‑M2/5‑147 (MQ=255)                                                                                                                                             ggttCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGGCGCTGGTTTCACATCCAGCAGCTCTACGTCAAACACCAGGGTAGAATTCGGTGGGATCCCCGGAACACCCGCttt      <  3:9854‑M2/143‑1 (MQ=255)                                                                                                                                                tCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGGCGCTGGTTTCACATCCAGCAGCTCTACGTCAAACACCAGGGTAGAATTCGGTGGGATCCCCGGAACACCCGCTTTGCCg  >  1:153877‑M2/2‑148 (MQ=255)                                                                                                                                                 |                                                                                                                                                   CTTTTCAGGAGCCTGTCGTTAACTTTTCAGGGCAGGCTCATTAATGATGCGGGTAACTAAATTAATACAGCGGAGGTTCCGCTTTCCAGCACTAATTATATCCGGCCTGTAATAAAAAAACCGCCGCCTGGTCAGGCGGCGGTTCTTAATGCTTATTTTTTAGCAGAATCTGCGGCTTTCGCATCAGCTTCCGGCTTTGCATCAGCCTTCGGCGCTGGTTTCACATCCAGCAGCTCTACGTCAAACACCAGGGTAGAATTCGGTGGGATCCCCGGAACACCCGCTTTGCCG  >  NC_000913/3476455‑3476745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.