BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4335653	111 (1.190)	4 (0.050)	4/236	NT	3.7%	intergenic (‑63/+41)	eptA/adiC	lipid A phosphoethanolamine transferase/arginine:agmatine antiporter
*	?	NC_000913	= 4335655	110 (1.320)	4 (0.050)	4/236	NT	3.7%	intergenic (‑65/+39)	eptA/adiC	lipid A phosphoethanolamine transferase/arginine:agmatine antiporter
Rejected: Frequency below/above cutoff threshold.

Only 100 of 160 total aligned reads displayed.

CAGGCAGATAGAGATATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGTGATGACCATCAGGGTGACAAATGACCA  >  NC_000913/4335507‑4335798

 aGGCAGATAGAGATATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGtt                                                                                                                                                 <  5:202597/148‑1 (MQ=255)

 aGGCAGATAGAGATATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGtt                                                                                                                                                 <  4:56156/148‑1 (MQ=255)

 aGGCAGATAGAGATATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTc                                                                                                                                                >  4:63091‑M2/1‑148 (MQ=255)

 aGGCAGATAGAGATATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTc                                                                                                                                                <  5:9493‑M2/149‑2 (MQ=255)

   gCAGATAGAGATATAAAAAGCGGCCCACAATATCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACCTCACGGTGTTTCCATCGAACAAAG‑TGCTCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTctt                                                                                                                                              >  6:102346‑M2/1‑146 (MQ=255)

      gATAGAGATATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaag                                                                                                                                           >  7:232476‑M2/1‑143 (MQ=255)

       aTAGAGATATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACGTCCCGGTGGTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaagg                                                                                                                                          <  3:231343‑M2/149‑8 (MQ=255)

        tAGAGATATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGaacttaagg                                                                                                                                          <  8:261299‑M1/148‑10 (MQ=255)

         agagATATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGCGGATTCAACTTCAGGGTTTTTCCAGCG‑ACAAAGTTGCGAATATGTTC‑CAAAGCAAAATTAAAGCCAACATTATGTAGTTAAGttt                                                                                                                                        >  5:198331/1‑149 (MQ=255)

          gagaTATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaaggttg                                                                                                                                       >  1:345538‑M2/1‑139 (MQ=255)

            gaTATAATAAGCGGCCAACAATAGCCATGCGAGTAAATTCAAAGAGTGTCTTTTTAGTAGTCTCTTCAACATCACGGTGTTTCCATCGAACAAAC‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGaacttaaggttggc                                                                                                                                     <  8:411277‑M1/149‑15 (MQ=255)

             atatAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCTAAGAGGGTCTTTTTAGTAGTCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaaggttggc                                                                                                                                     >  8:409293‑M2/1‑136 (MQ=255)

             atatAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaaggttggct                                                                                                                                    <  5:254772‑M2/149‑14 (MQ=255)

                taAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCtttt                                                                                                                                 <  7:352598/149‑1 (MQ=255)

                taAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCttt                                                                                                                                  <  1:226877/148‑1 (MQ=255)

                    aaGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGt                                                                                                                             <  3:219815/149‑1 (MQ=255)

                      gCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaa                                                                                                                                            <  2:348047‑M2/132‑6 (MQ=255)

                      gCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaa                                                                                                                                            >  1:348047‑M2/1‑127 (MQ=255)

                         gCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGttt                                                                                                                           >  4:360656/1‑146 (MQ=255)

                         gCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCt                                                                                                                        >  5:397890/1‑149 (MQ=255)

                            aacaaTAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGTTGTTTCCATCGAACAAAG‑TGCGCATATGCTCTCAAAGAAAAATT‑AAGCCAAACTTATGTTATTAAGGTTGGATTTTATTTTTGCTGGa                                                                                                                     >  6:356088/1‑149 (MQ=255)

                               aaTAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaaggttgg                                                                                                                                      <  1:93480‑M2/129‑12 (MQ=255)

                               aaTAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaaggttgg                                                                                                                                      >  2:93480‑M2/1‑118 (MQ=255)

                                 tAGCCAGGCGAGTAAATTCAAAGAGGGGCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGACCAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAg                                                                                                                <  6:162085/149‑1 (MQ=255)

                                  aGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAgg                                                                                                               >  6:184021/1‑149 (MQ=255)

                                    ccAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGAtt                                                                                                                   >  7:415512/1‑143 (MQ=255)

                                      aGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGaa                                                                                                           >  7:95802/1‑149 (MQ=255)

                                      aGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTATTATGTTTGCTGGAGTAAGGGGaa                                                                                                           >  4:276034/1‑149 (MQ=255)

                                      aGGCGAGTAAATTAAACGAGGGTCTTTTTAGTCGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTGAAGTTCTTAAGGGTGGCTTTTATGTTTGGGGGATGAAGGGGaa                                                                                                           >  6:281834/1‑149 (MQ=255)

                                          gAGTAAATTCAAAGAGGGTCTTTTTTGGACGCGCTTCAACTTCACGGAGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAATGTTGGCTTTTATGTTTGCTTTATTAAGGGGAATaaa                                                                                                       <  2:351207/149‑1 (MQ=255)

                                               aaTTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCttt                                                                                                  >  3:169289/1‑149 (MQ=255)

                                                aTTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTaa                                                                                                                 <  8:341466/133‑1 (MQ=255)

                                                aTTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTg                                                                                                 >  8:336736/1‑149 (MQ=255)

                                                aTTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTg                                                                                                 >  6:411410/1‑149 (MQ=255)

                                                aTTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCACCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTg                                                                                                 <  1:80390/149‑1 (MQ=255)

                                                 ttCAAAGAGTGTCTTTTTAGTAGGCGCTTCAACATCACTGTGTTTCCATAGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGc                                                                                                <  8:380138/149‑1 (MQ=255)

                                                  tCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCt                                                                                               >  6:399845/1‑149 (MQ=255)

                                                    aaaGCGGGGCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTg                                                                                                                       <  6:281607/123‑1 (MQ=255)

                                                    aaaGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaaggttggcttaattttgctttgcgagcatatgcgcactttgtt                                                                                                  >  4:264114‑M2/1‑97 (MQ=255)

                                                    aaaGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTa                                                                                             >  1:260208/1‑149 (MQ=255)

                                                      agagGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTAtt                                                                                           >  2:156351/1‑149 (MQ=255)

                                                            tCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCa                                                                                     >  3:91259/1‑149 (MQ=255)

                                                            tCTTTTTAGTAGCCGCTTCAACATCACGGTGATTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTAATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGCTGCa                                                                                     >  4:203502/1‑149 (MQ=255)

                                                                  tagtagGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTaa                                                                                <  5:399845/148‑1 (MQ=255)

                                                                   agtagGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAg                                                                               <  5:148654/148‑1 (MQ=255)

                                                                       ggCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGAt                                                                           <  4:31992/148‑1 (MQ=255)

                                                                          gcTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTcttaaggttggc                                                                                                                                     <  4:218481‑M2/87‑13 (MQ=255)

                                                                            ttCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGt                                                                     >  7:225736/1‑149 (MQ=255)

                                                                            ttCAACATCACGGTGTTTCCATCGAAAAAAG‑TGAGCATATGCTCGCAAAGCAAAATT‑AACCCAAACTTAAGTTCTTAAGGTAGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCATTGCTTATTGGTGCATCTAAGGGATACGGGt                                                                     >  1:109782/1‑149 (MQ=255)

                                                                              cAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGttt                                                                   >  4:233994/1‑149 (MQ=255)

                                                                              cAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGttt                                                                   >  1:236340/1‑149 (MQ=255)

                                                                               aaCATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGtttt                                                                  >  5:280962/1‑149 (MQ=255)

                                                                               aaCATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGtttt                                                                  <  1:156351/149‑1 (MQ=255)

                                                                                acctCACGGGGGTTCCATCGCACAAAC‑GGCGCATATGCTCGCAAATCAAAATT‑TACGCCACCTTAAGGTCTTAACGTTGGGTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGttttt                                                                 <  2:207214/146‑1 (MQ=255)

                                                                                 cATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTa                                                                <  4:169289/149‑1 (MQ=255)

                                                                                    cACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATg                                                              >  8:231932/1‑148 (MQ=255)

                                                                                     aCGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGt                                                             <  4:91259/148‑1 (MQ=255)

                                                                                      cGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAg                                                           <  6:9493/149‑1 (MQ=255)

                                                                                       ggTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGc                                                          <  8:8877/149‑1 (MQ=255)

                                                                                       ggTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGc                                                          <  2:236340/149‑1 (MQ=255)

                                                                                          gtTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCgg                                                       <  4:379039/149‑1 (MQ=255)

                                                                                                aTCGAACAAAG‑TGCGTATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAg                                                           >  8:182754/1‑139 (MQ=255)

                                                                                                aTCGAACAAAG‑TGCGTATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAg                                                           <  7:182754/139‑1 (MQ=255)

                                                                                                aTCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTaa                                                 <  6:146867/149‑1 (MQ=255)

                                                                                                 tCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGt                                                                                        <  3:392475/109‑1 (MQ=255)

                                                                                                   gAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGATCTTAAGGGTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGGTTATTg                                                                                          >  1:414070/1‑105 (MQ=255)

                                                                                                    aaCAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGaacttaaggttggcttaattttgctttgcgagcatatgcgcactttgttcgatggaaacaccgtgatgttgaagcgcctactaaaaagaccctcttt                                                  <  3:264114‑M1/144‑98 (MQ=255)

                                                                                                     aCAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAg                                            >  6:163020/1‑149 (MQ=255)

                                                                                                      cAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAgc                                           <  7:231932/149‑1 (MQ=255)

                                                                                                            tGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATa                                      <  5:172926/149‑1 (MQ=255)

                                                                                                               gcATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGtt                                                     >  5:90327/1‑131 (MQ=255)

                                                                                                               gcATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGtt                                                     <  6:90327/131‑1 (MQ=255)

                                                                                                                cATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATg                                  <  6:254772/149‑1 (MQ=255)

                                                                                                                    tGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCgg                              >  3:11748/1‑149 (MQ=255)

                                                                                                                       tCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGtga                           >  4:30093/1‑149 (MQ=255)

                                                                                                                       tCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGtga                           >  4:100964/1‑149 (MQ=255)

                                                                                                                       tCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAAACTTTGCTTATTGGTGAATCTAAGGGATACGGTTTTTTATGTATCCGGTTGTAATTCAGCGCATACATGGAGGtga                           >  4:254838/1‑149 (MQ=255)

                                                                                                                         gcaaagcaaaATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGAATCTAAGGGATACGGGTTTTTATGTAGCCGGTGGTAATTCAGCGCCTACATGGCGGtgat                          <  3:254838/148‑1 (MQ=255)

                                                                                                                          caaagcaaaATT‑AAGCCAACCTTAAGTTCTTCAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGtgatga                        <  3:362774/149‑1 (MQ=255)

                                                                                                                           aaagcaaaATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGTGATGAc                       >  2:296210/1‑149 (MQ=255)

                                                                                                                            aagcaaaATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGTGATGAcc                      <  8:216164/149‑1 (MQ=255)

                                                                                                                              gcaaaATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGTGATGACCAt                    <  3:357588/149‑1 (MQ=255)

                                                                                                                               caaaATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGTGATGACCAt                    >  4:314161/1‑148 (MQ=255)

                                                                                                                               caaaATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGTGATGACCAt                    >  8:122772/1‑148 (MQ=255)

                                                                                                                                   ataaaaGCCAACCTTAAGAACTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGTGATGACCATCAgg                >  3:265728/5‑149 (MQ=255)

                                                                                                                                       aaGCCAACCTTAAGAACTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGTGATGACCATCAGGGTGa            >  1:66978/1‑149 (MQ=255)

                                                                                                                                        aGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGTGATGACCATCAGGGTGa            >  3:321943/1‑148 (MQ=255)

                                                                                                                                         gCCAACCTTAAGaacttaaggttggcttaattttgctttgcgagcatatgcgcactttgttcgatggaaacaccgtgatgttgaagcgactactaaaaagaccctcttagaatttactcgcctggctattgttggccgctttttatat           >  8:409293‑M1/1‑12 (MQ=255)

                                                                                                                                         gCCAACCTTAAGaacttaaggttggcttaattttgctttgcgagcatatgcgcactttgttcgatggaaacaccgtgatgttgaagc                                                                        >  3:218481‑M1/1‑12 (MQ=255)

                                                                                                                                         gCCAACCTTAAGTTcttaaggttggcttaattttgctttgcgagcatatgcgcagtttgttcgatggaaacaccgtgatgttgaagagactactaaaaagacactctttgaatttactcgcatggctattgttggccgcttattatatc          <  8:411277‑M2/149‑136 (MQ=255)

                                                                                                                                          ccAACCTTAAGaacttaaggttggcttaattttgctttgcgagcatatgcgcactttgttcgatggaaacaccgtgatgttgaagcgcctactaaaaagaccctctttgaatttactcgcctggctattgttggccgctttttatatct         <  6:266958‑M1/149‑139 (MQ=255)

                                                                                                                                           cAACCTTAAGaacttaaggttggcttaattttgctttgcgagcatatgcgcactttgttcgatggaaacaccgtgatgttgaagcgcctactaaaaagaccctctttgaatttactcgcctggctattgttggccgctttttatatctc        >  1:345538‑M1/1‑10 (MQ=255)

                                                                                                                                              ccTTAAGaacttaaggttggcttaattttgctttgcgagcatatgcgcactttgttcgatggaaccaccgggacgttgaagcgcctactaaaaagaccctctttgaatttactcgcctggctattgttggccgctttttatatctctat     <  3:231343‑M1/149‑143 (MQ=255)

                                                                                                                                               cTTAAGaacttaaggttggcttaattttgctttgcgagcatatgcgcactttgttcgatggaaacaccgtgatgttgaagcgcctactaaaaagaccctctttgaatttactcgcctggctattgttggccgctttttatatctctatc    <  5:163548‑M1/149‑144 (MQ=255)

                                                                                                                                               cTTAAGaacttaaggttggcttaattttgctttgcgagcatatgcgcactttgttcgatggaaacaccgtgatgttgaagcgcctactaaaaagaccctctttgaatttactcgcctggctattgttggccgctttttatatctctatc    <  3:379039‑M1/149‑144 (MQ=255)

                                                                                                                                               cTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCa                                        <  1:79768/113‑1 (MQ=255)

                                                                                                                                               cTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCa                                        >  2:79768/1‑113 (MQ=255)

                                                                                                                                               cTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGTGATGACCATCAGGGTGACAAATGAc    <  7:336736/149‑1 (MQ=255)

                                                                                                                                               cTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTAGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGTGATGACCATCAGGGTGACAAATGAc    >  5:362704/1‑149 (MQ=255)

                                                                                                                                                 tAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGACGGTTGTAATTCAGCGCATACATGGCGGTGATGACCATCAGGGTGACAAATGAcc   >  5:265123/1‑148 (MQ=255)

CAGGCAGATAGAGATATAAAAAGCGGCCAACAATAGCCAGGCGAGTAAATTCAAAGAGGGTCTTTTTAGTAGGCGCTTCAACATCACGGTGTTTCCATCGAACAAAG‑TGCGCATATGCTCGCAAAGCAAAATT‑AAGCCAACCTTAAGTTCTTAAGGTTGGCTTTTATGTTTGCTGGATTAAGGGGAATTAATCTTTGCTTATTGGTGCATCTAAGGGATACGGGTTTTTATGTAGCCGGTTGTAATTCAGCGCATACATGGCGGTGATGACCATCAGGGTGACAAATGACCA  >  NC_000913/4335507‑4335798

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.