BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979270	1979278	9–776	112 [0]	[0] 110	insB1–insA	insB1,insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	107 (1.220)	72/268	0.1	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
*	?	NC_000913	1979279 =	0 (0.000)	107 (1.220)	72/268	0.1	100%	intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

Only 100 of 112 total aligned reads displayed.

ATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTC  >  NC_000913/1978353‑1978646

aTAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATG                                                                                                                                                  >  3:210012‑M1/1‑150 (MQ=255)

aTAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATG                                                                                                                                                  >  2:1009425‑M1/1‑150 (MQ=255)

          gTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcat                                                                                                                                        <  1:306385‑M1/150‑11 (MQ=255)

            cTTTACACTTATCTAAGATTTTTTCTAAATCGTCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatac                                                                                                                                      >  2:199995‑M1/1‑138 (MQ=255)

               tACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttt                                                                                                                                   >  1:963912‑M1/1‑135 (MQ=255)

                  acTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt                                                                                                                                >  1:1123104‑M1/1‑132 (MQ=255)

                       tCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                           <  2:1027517‑M1/150‑24 (MQ=255)

                       tCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                           <  4:132947‑M1/150‑24 (MQ=255)

                         tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                                                                         >  1:707255‑M1/1‑125 (MQ=255)

                         tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                                                                         <  2:694084‑M1/150‑26 (MQ=255)

                         tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                                                                         >  4:268812‑M1/1‑125 (MQ=255)

                         tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACACAAATGtataagtcatacttttgttttgggt                                                                                                                         <  2:92817‑M1/150‑26 (MQ=255)

                          aaGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtg                                                                                                                        >  2:795403‑M1/1‑124 (MQ=255)

                          aaGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtg                                                                                                                        <  2:801490‑M1/150‑27 (MQ=255)

                          aaGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtg                                                                                                                        >  1:1046233‑M1/1‑124 (MQ=255)

                          aaGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagccatcattttgttttgggtg                                                                                                                        >  2:1034336‑M1/1‑124 (MQ=255)

                             aTTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat                                                                                                                     <  2:707255‑M1/150‑30 (MQ=255)

                               ttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattt                                                                                                                   <  2:278379‑M1/150‑32 (MQ=255)

                                    cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatc                                                                                                              >  1:905744‑M1/1‑114 (MQ=255)

                                    cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatc                                                                                                              >  1:645424‑M1/1‑114 (MQ=255)

                                    cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGAGCTTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatc                                                                                                              >  3:424576‑M1/1‑114 (MQ=255)

                                     tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatct                                                                                                             >  2:372918‑M1/1‑113 (MQ=255)

                                       aaTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGTGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtaatacttttgttttgggtgtatttcaatctgt                                                                                                           <  3:84992‑M1/150‑40 (MQ=255)

                                       aaTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTTACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                                                                                                           <  4:501680‑M1/150‑40 (MQ=255)

                                        aTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtt                                                                                                          <  2:423972‑M1/150‑41 (MQ=255)

                                         tCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtta                                                                                                         <  3:299410‑M1/150‑42 (MQ=255)

                                            aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaa                                                                                                      <  2:354600‑M1/150‑45 (MQ=255)

                                             cGCAACTGTACTCGTCACTACACGCACATACAATGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                     <  3:427197‑M1/150‑46 (MQ=255)

                                             cGCAACTGTACTCGTCACTAAACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                     <  4:424576‑M1/150‑46 (MQ=255)

                                                aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagacatacttttgttttgtgtgtatttcaatctgttaaaaagtt                                                                                                  >  3:428653‑M1/1‑102 (MQ=255)

                                                   tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                               >  2:1027318‑M1/1‑99 (MQ=255)

                                                   tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                               >  1:225833‑M1/1‑99 (MQ=255)

                                                    gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc                                                                                              <  1:60692‑M1/150‑53 (MQ=255)

                                                    gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc                                                                                              >  4:31548‑M1/1‑98 (MQ=255)

                                                    gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                                                                         <  1:616386‑M1/123‑26 (MQ=255)

                                                    gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                                                                         >  2:616386‑M1/1‑98 (MQ=255)

                                                          gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacg                                                                                        >  2:661232‑M1/1‑92 (MQ=255)

                                                          gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacg                                                                                        <  4:32263‑M1/150‑59 (MQ=255)

                                                               tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTTAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc                                                                                   >  4:34416‑M1/1‑87 (MQ=255)

                                                               tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc                                                                                   >  2:523445‑M1/1‑87 (MQ=255)

                                                               tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc                                                                                   >  1:144701‑M1/1‑87 (MQ=255)

                                                               tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc                                                                                   <  2:521385‑M1/150‑64 (MQ=255)

                                                                 cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                           >  4:333207‑M1/1‑85 (MQ=255)

                                                                 cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                           <  3:333207‑M1/108‑24 (MQ=255)

                                                                  acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag                                                                                >  2:609240‑M1/1‑84 (MQ=255)

                                                                    gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtctttcaatctgttaacaagtttttagctacgctagccagca                                                                              >  2:951848‑M1/1‑82 (MQ=255)

                                                                    gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagca                                                                              >  1:1060161‑M1/1‑82 (MQ=255)

                                                                    gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatccgttaaaaagtttttcgctacgctagcaagca                                                                              >  3:426803‑M1/1‑82 (MQ=255)

                                                                      acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaa                                                                            <  4:79401‑M1/150‑71 (MQ=255)

                                                                         tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaat                                                                         >  4:419113‑M1/1‑77 (MQ=255)

                                                                           cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatga                                                                       <  1:169489‑M1/150‑76 (MQ=255)

                                                                           cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatga                                                                       <  1:354859‑M1/150‑76 (MQ=255)

                                                                           cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatga                                                                       <  2:333512‑M1/150‑76 (MQ=255)

                                                                            aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaa                                                                      >  3:305758‑M1/1‑74 (MQ=255)

                                                                             aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                                                                     <  3:419113‑M1/150‑78 (MQ=255)

                                                                               ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctatgctagcaagcaaaaatgaaaca                                                                   <  4:298464‑M1/150‑80 (MQ=255)

                                                                                     gggCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataggtcatacttttgttttgggtgtatttcaatctgttataaagtttttcgctacgctagcaagcaaaaatgaaacaggaata                                                             >  1:625380‑M1/1‑65 (MQ=255)

                                                                                       gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataa                                                            >  4:511035‑M1/1‑64 (MQ=255)

                                                                                            gATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa                                                      <  2:1123104‑M1/150‑93 (MQ=255)

                                                                                              ttttCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg                                                    <  1:1121710‑M1/150‑95 (MQ=255)

                                                                                                ttCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttctcttctttttcaagcaaaaatgaaacaggaataatcgaaatgtg                                                  >  4:467329‑M1/1‑54 (MQ=255)

                                                                                                 tCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtttaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgaga                                                 >  2:798073‑M1/1‑53 (MQ=255)

                                                                                                   aataatGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg                                               >  1:179836‑M1/1‑51 (MQ=255)

                                                                                                   aataatGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtt                                                                                                          >  2:119380‑M1/1‑51 (MQ=255)

                                                                                                   aataatGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtt                                                                                                          <  1:119380‑M1/91‑41 (MQ=255)

                                                                                                     taatGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgtt                                             >  2:380187‑M1/1‑49 (MQ=255)

                                                                                                     taatGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgtt                                             <  1:588066‑M1/150‑102 (MQ=255)

                                                                                                           gTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaa                                       >  2:1141262‑M1/1‑43 (MQ=255)

                                                                                                            tGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaca                                      <  2:904893‑M1/150‑109 (MQ=255)

                                                                                                               tGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttt                                                                                                >  2:61177‑M1/1‑39 (MQ=255)

                                                                                                               tGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttt                                                                                                <  1:61177‑M1/89‑51 (MQ=255)

                                                                                                                gCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtca                                  >  1:188228‑M1/1‑38 (MQ=255)

                                                                                                                gCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtca                                  >  3:510480‑M1/1‑38 (MQ=255)

                                                                                                                   gATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttttgttatgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                               >  2:1117070‑M1/1‑35 (MQ=255)

                                                                                                                   gATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                               <  3:493485‑M1/150‑116 (MQ=255)

                                                                                                                   gATCACAC‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                               >  4:59163‑M1/1‑35 (MQ=255)

                                                                                                                      cacac‑aAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                            <  4:214033‑M1/150‑119 (MQ=255)

                                                                                                                      cacac‑aAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                            >  2:974808‑M1/1‑32 (MQ=255)

                                                                                                                       acac‑aAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataac                           <  3:268812‑M1/150‑120 (MQ=255)

                                                                                                                       acac‑aAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataac                           <  2:179926‑M1/150‑120 (MQ=255)

                                                                                                                       acac‑aAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacaaaagaaagaaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataac                           <  2:179848‑M1/150‑120 (MQ=255)

                                                                                                                       acac‑aAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtatatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataac                           >  1:728051‑M1/1‑31 (MQ=255)

                                                                                                                         ac‑aAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactc                         >  1:601621‑M1/1‑29 (MQ=255)

                                                                                                                            aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcac                       <  1:380187‑M1/150‑124 (MQ=255)

                                                                                                                            aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagt                                    >  1:481242‑M1/1‑27 (MQ=255)

                                                                                                                            aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagt                                    <  2:481242‑M1/137‑111 (MQ=255)

                                                                                                                                  cTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttctctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaa                 >  2:404604‑M1/1‑21 (MQ=255)

                                                                                                                                  cTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                     <  4:391280‑M1/66‑46 (MQ=255)

                                                                                                                                  cTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                     >  3:391280‑M1/1‑21 (MQ=255)

                                                                                                                                   tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                               >  1:298209‑M1/1‑20 (MQ=255)

                                                                                                                                   tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                               <  2:298209‑M1/135‑116 (MQ=255)

                                                                                                                                     aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataa              >  2:765334‑M1/1‑18 (MQ=255)

                                                                                                                                      aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataat             <  1:108857‑M1/150‑134 (MQ=255)

                                                                                                                                          cTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatc         <  2:1046233‑M1/150‑138 (MQ=255)

                                                                                                                                           ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatct        >  1:198113‑M1/1‑12 (MQ=255)

                                                                                                                                             aaCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgc      >  2:456446‑M1/1‑10 (MQ=255)

                                                                                                                                              aCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgct     >  2:502646‑M1/1‑9 (MQ=255)

                                                                                                                                                aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttttcttttttttcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcacagtaaataatcatgtgctat   >  2:292142‑M1/1‑7 (MQ=255)

                                                                                                                                                aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctat   >  2:184760‑M1/1‑7 (MQ=255)

                                                                                                                                                 tAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctata  >  1:318987‑M1/1‑6 (MQ=255)

ATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAC‑AAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTC  >  NC_000913/1978353‑1978646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`