mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 39.6% | 98.0 / 116.9 | 112 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 70 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 88 (0.950) | 20 (0.240) | 19/252 | 5.8 | 20.0% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 82 (0.990) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 83 (0.890) | 19 (0.230) | 18/252 | 6.2 | 19.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 80 (0.970) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4040683 | 83 (0.890) | 20 (0.220) | 9/280 | 10.7 | 17.2% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4213162 | 110 (1.200) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 1613275 | 86 (0.920) | 9 (0.100) | 8/266 | 10.7 | 10.1% | intergenic (‑24/+40) | glsB/sad | glutaminase 2/succinate semialdehyde dehydrogenase, NAD(P)+‑dependent |
| ? | NC_000913 | = 1613279 | 79 (0.910) | intergenic (‑28/+36) | glsB/sad | glutaminase 2/succinate semialdehyde dehydrogenase, NAD(P)+‑dependent | |||||
| * | ? | NC_000913 | = 1428264 | NA (NA) | 36 (0.400) | 8/272 | 10.9 | 88.3% | noncoding (531/1196 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2066866 | 5 (0.050) | noncoding (488/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1396537 = | NA (NA) | 36 (0.400) | 8/272 | 10.9 | 26.6% | noncoding (494/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428270 | 104 (1.120) | noncoding (525/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 3423665 = | NA (NA) | 11 (0.120) | 8/280 | 11.2 | 11.8% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4040683 | 83 (0.890) | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913 | 1516656 = | 90 (0.970) | 7 (0.080) | 7/270 | 11.4 | 7.5% | coding (1079/1425 nt) | patD | gamma‑aminobutyraldehyde dehydrogenase |
| ? | NC_000913 | 1516683 = | 87 (0.980) | coding (1106/1425 nt) | patD | gamma‑aminobutyraldehyde dehydrogenase | |||||
| * | ? | NC_000913 | 1097456 = | 31 (0.330) | 10 (0.110) | 7/268 | 11.4 | 27.3% | intergenic (+627/+109) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097476 = | 24 (0.270) | intergenic (+647/+89) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1097275 = | 19 (0.200) | 10 (0.110) | 7/268 | 11.4 | 32.3% | intergenic (+446/+290) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097476 = | 24 (0.270) | intergenic (+647/+89) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||