mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 34.4% | 67.3 / 57.0 | 64 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 2,305,086 | 0 | C | G | 22.7% | 45.2 / 12.2 | 22 | intergenic (+693/+22) | eco/mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4321860 = | 48 (1.470) | 4 (0.130) | 4/258 | 3.4 | 8.0% | coding (563/726 nt) | phnF | putative DNA‑binding transcriptional regulator of phosphonate uptake and biodegradation |
| ? | NC_000913 | 4321892 = | 46 (1.470) | coding (531/726 nt) | phnF | putative DNA‑binding transcriptional regulator of phosphonate uptake and biodegradation | |||||
| * | ? | NC_000913 | 2834089 = | 38 (1.160) | 4 (0.130) | 4/256 | 3.4 | 10.4% | coding (178/1134 nt) | norW | NADH:flavorubredoxin oxidoreductase |
| ? | NC_000913 | 2834107 = | 33 (1.060) | coding (196/1134 nt) | norW | NADH:flavorubredoxin oxidoreductase | |||||
| * | ? | NC_000913 | = 5544 | 32 (0.980) | 4 (0.130) | 4/254 | 3.4 | 12.3% | intergenic (+14/+139) | yaaX/yaaA | DUF2502 family putative periplasmic protein/peroxide resistance protein, lowers intracellular iron |
| ? | NC_000913 | = 5552 | 27 (0.880) | intergenic (+22/+131) | yaaX/yaaA | DUF2502 family putative periplasmic protein/peroxide resistance protein, lowers intracellular iron | |||||
| * | ? | NC_000913 | 381260 = | NA (NA) | 4 (0.120) | 4/270 | 3.6 | 11.4% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 911086 = | 31 (0.950) | intergenic (‑37/+96) | poxB/hcr | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding/HCP oxidoreductase, NADH‑dependent | |||||
| * | ? | NC_000913 | 1169369 = | 25 (0.760) | 3 (0.100) | 3/248 | 3.8 | 12.3% | intergenic (+39/+43) | bhsA/ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| ? | NC_000913 | 1169396 = | 20 (0.670) | intergenic (+66/+16) | bhsA/ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein | |||||