New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4304585	57 (1.800)	4 (0.140)	4/248	3.2	6.8%	intergenic (‑182/+27)	ytcA/yjcS	putative inner membrane efflux pump‑associated DUF1656 family protein/metallo‑beta‑lactamase superfamily protein
	?	NC_000913	= 4304591	57 (1.960)					intergenic (‑188/+21)	ytcA/yjcS	putative inner membrane efflux pump‑associated DUF1656 family protein/metallo‑beta‑lactamase superfamily protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGAATATCAATATCCATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGATCC  >  NC_000913/4304441‑4304726                                                                                                                                                 |                                                                                                                                              gTGAATATCAATATCCATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCtt                                                                                                                                             <  2:50897/147‑1 (MQ=255) gTGAATATCAATATCCATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCtt                                                                                                                                             >  1:50897/1‑147 (MQ=255)        tcaatatcCATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGccc                                                                                                                                     <  4:20230/148‑1 (MQ=255)              tcCATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCGGCGCCCCCAAAAg                                                                                                                              >  6:59927/1‑149 (MQ=255)                     aaGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGa                                                                                                                       <  1:106393/149‑1 (MQ=255)                          gTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACAtt                                                                                                                   >  1:3873/1‑148 (MQ=255)                                 tGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTggg                                                                                                           <  8:79272/149‑1 (MQ=255)                                 tGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTgg                                                                                                            <  6:77104/148‑1 (MQ=255)                                   gCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTgggg                                                                                                          <  3:29639/148‑1 (MQ=255)                                     tATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTa                                                                                                       >  1:63117/1‑149 (MQ=255)                                     tATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTa                                                                                                       >  1:94677/1‑149 (MQ=255)                                     tATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTa                                                                                                       >  7:13616/1‑149 (MQ=255)                                         ttCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGa                                                                                                    <  2:3873/148‑1 (MQ=255)                                            ttGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATAtt                                                                                                >  1:101102/1‑149 (MQ=255)                                             tgatgaATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTg                                                                                                             <  6:111495/135‑1 (MQ=255)                                              gatgaATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGt                                                                                                                         <  1:4694/122‑1 (MQ=255)                                              gatgaATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGt                                                                                                                         >  2:4694/1‑122 (MQ=255)                                               atgaATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATAtt                                                                                                <  1:79322/146‑1 (MQ=255)                                               atgaATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATAtt                                                                                                >  2:79322/1‑146 (MQ=255)                                                   aTAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGa                                                                                                                       <  6:47492/119‑1 (MQ=255)                                                   aTAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGa                                                                                                                       >  5:47492/1‑119 (MQ=255)                                                   aTAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCca                                                                                          >  2:47110/1‑148 (MQ=255)                                                       aaaTAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAAt                                                                                     <  1:35421/149‑1 (MQ=255)                                                             cTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAAt                                                                               >  2:111004/1‑149 (MQ=255)                                                              tttATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTgggg                                                                                                          >  4:68859/1‑121 (MQ=255)                                                                tATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTa                                                                             <  1:47110/148‑1 (MQ=255)                                                                 aTTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTAt                                                                            <  8:13616/148‑1 (MQ=255)                                                                  ttCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATcc                                                                          <  6:120923/149‑1 (MQ=255)                                                                  ttCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATc                                                                           <  2:63117/148‑1 (MQ=255)                                                                     aGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGGGACATTAATTTGGGGTAACGATATTCACCCACAAATCGAAATTATCCAGa                                                                       >  4:54097/1‑149 (MQ=255)                                                                                     aCTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATttctt                                                       <  5:99823/149‑1 (MQ=255)                                                                                       ttATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTgg                                                                                                            <  5:21799/94‑1 (MQ=255)                                                                                       ttATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTgg                                                                                                            >  6:21799/1‑94 (MQ=255)                                                                                       ttATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGAGCCCCCATAAGCGAGTGACATTAATTTGGGGTTACGATTTTCACACACTAATCGAAATTATCCAGACAGGCGATAATttcttc                                                      >  3:97367/1‑148 (MQ=255)                                                                                       ttATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTAATCGCCACCAAAAGCTAGTGACATTAATTTGGGTTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATttcttc                                                      >  7:41285/1‑148 (MQ=255)                                                                                           atatTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGtt                                                 >  8:68103/1‑149 (MQ=255)                                                                                            tattttatttATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGttt                                                >  4:82723/1‑149 (MQ=255)                                                                                              ttttatttATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTcg                                              >  1:143529/1‑149 (MQ=255)                                                                                                      attaATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCAtt                                       <  2:101102/148‑1 (MQ=255)                                                                                                        taATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGc                                     >  3:34679/1‑148 (MQ=255)                                                                                                          aTTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAg                                                                    >  2:37407/1‑115 (MQ=255)                                                                                                          aTTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAg                                                                    <  1:37407/115‑1 (MQ=255)                                                                                                               cTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCGGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAAtt                             <  5:59927/149‑1 (MQ=255)                                                                                                               cTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTAt                                                                            <  1:105334/102‑1 (MQ=255)                                                                                                               cTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTAt                                                                            >  2:105334/1‑102 (MQ=255)                                                                                                                  tatataTTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAAtttt                           <  1:158650/148‑1 (MQ=255)                                                                                                                  tatataTTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTg                          <  3:82723/149‑1 (MQ=255)                                                                                                                       atTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATttct                                                        >  7:102145/1‑114 (MQ=255)                                                                                                                       atTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATttct                                                        <  8:102145/114‑1 (MQ=255)                                                                                                                       atTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCttt                     >  3:106403/1‑149 (MQ=255)                                                                                                                               aataaataCTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAgg                                                                   <  7:40996/95‑1 (MQ=255)                                                                                                                               aataaataCTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAgg                                                                   >  8:40996/1‑95 (MQ=255)                                                                                                                                 taaataCTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCttt            >  7:7607/1‑148 (MQ=255)                                                                                                                                  aaataCTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTa          >  3:38472/1‑149 (MQ=255)                                                                                                                                        ttttGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTAc         >  7:12342/1‑144 (MQ=255)                                                                                                                                        ttttGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTAc         >  1:88243/1‑144 (MQ=255)                                                                                                                                           tGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACTATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGATcc  <  8:7607/148‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                              GTGAATATCAATATCCATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGATCC  >  NC_000913/4304441‑4304726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.