New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4612024	33 (1.040)	6 (0.200)	5/254	2.9	15.8%	intergenic (+23/‑104)	osmY/ytjA	salt‑inducible putative ABC transporter periplasmic binding protein/uncharacterized protein
	?	NC_000913	= 4612030	33 (1.110)					intergenic (+29/‑98)	osmY/ytjA	salt‑inducible putative ABC transporter periplasmic binding protein/uncharacterized protein
Rejected: Frequency below/above cutoff threshold.

GGCGTGGTTCAGCTCTCCGGTACCGTCGATTCTCAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTCTGGTTATCGCGTTAATCG  >  NC_000913/4611885‑4612170                                                                                                                                            |                                                                                                                                                   ggCGTGGTTCAGCTCTCCGGTACCGTCGATTCTCAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAcaaagttcg                                                                                                                                           >  2:109402‑M1/1‑140 (MQ=255)      ggTTCAGCTCTCCGGTACCGTCGATTCTCAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGtcgggagg                                                                                                                                      <  7:18679‑M2/149‑9 (MQ=255)       gTTCAGCTCTCCGGTACCGTCGATTCTCAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAcaaagttcgggagga                                                                                                                                     <  1:109402‑M1/149‑16 (MQ=255)              tctcCGGTACCGTCGATTCTCAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAcaaagttcgggagga                                                                                                                                     <  8:22383‑M1/142‑16 (MQ=255)              tctcCGGTACCGTCGATTCTCAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAcaaagttcgggagga                                                                                                                                     >  7:22383‑M1/1‑127 (MQ=255)              tctcCGGTACCGTCGATTCTCAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGAtgt                                                                                                                              >  3:64543/1‑149 (MQ=255)                        cGTCGATTCTCAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCacac                                                                                                                     >  5:88379/1‑148 (MQ=255)                          tCGATTCTCAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTa                                                                                                                   >  6:97763/1‑148 (MQ=255)                                 tcAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATc                                                                                                           >  1:91395/1‑149 (MQ=255)                                     gCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCAt                                                                                                       <  4:64543/149‑1 (MQ=255)                                                 cGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTc                                                                                           <  2:91395/149‑1 (MQ=255)                                                   tGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCAc                                                                                         <  6:91242/149‑1 (MQ=255)                                                       gAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGcac                                                                                                                          <  3:55929/112‑1 (MQ=255)                                                       gAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGcac                                                                                                                          >  4:55929/1‑112 (MQ=255)                                                       gAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCt                                                                                      >  4:30951/1‑148 (MQ=255)                                                          aGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCata                                                                                  >  1:98969/1‑149 (MQ=255)                                                                gCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGAttt                                                                                             <  7:67335/132‑1 (MQ=255)                                                                gCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGAttt                                                                                             >  8:67335/1‑132 (MQ=255)                                                                 ccAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCg                                                                           >  3:99278/1‑149 (MQ=255)                                                                  cAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAat                                                                                                              <  4:107949/113‑1 (MQ=255)                                                                  cAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAat                                                                                                              >  3:107949/1‑113 (MQ=255)                                                                   aaaGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGt                                                                         <  5:97763/149‑1 (MQ=255)                                                                     aGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGt                                                                         >  7:71684/1‑147 (MQ=255)                                                                     aGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGt                                                                         <  8:71684/147‑1 (MQ=255)                                                                            gATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAAc                                                                >  8:9980/1‑149 (MQ=255)                                                                              tGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTa                                                              <  8:18679/149‑1 (MQ=255)                                                                                gtgtGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATg                                                            <  2:98969/149‑1 (MQ=255)                                                                                      aaaGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGCAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATCGTAAAg                                                      >  7:39022/1‑149 (MQ=255)                                                                                                aaaTGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTa                                            >  7:7037/1‑149 (MQ=255)                                                                                                     aTCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGtt                                        <  3:30951/148‑1 (MQ=255)                                                                                                      tCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTc                                      >  1:45097/1‑149 (MQ=255)                                                                                                        tGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGa                                                                                                    <  6:51210/85‑1 (MQ=255)                                                                                                        tGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGa                                                                                                    >  5:51210/1‑85 (MQ=255)                                                                                                         gAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGtt                                   >  2:93529/1‑149 (MQ=255)                                                                                                                         gtcgtaattcgtcCTCCCGAcaaagttcgggaggac                                                                                                                                    <  7:77727‑M1/36‑17 (MQ=255)                                                                                                                         gtcgtaattcgtcCTCCCGAcaaagttcgggaggac                                                                                                                                    >  8:77727‑M1/1‑20 (MQ=255)                                                                                                                         gtcgtaattcgtcCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTc                    <  6:88379/148‑1 (MQ=255)                                                                                                                          tcgtaattcgtcCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTCTg                  <  7:9980/149‑1 (MQ=255)                                                                                                                          tcgtaattcgtcCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTCTg                  <  4:99278/149‑1 (MQ=255)                                                                                                                                   gtcCTCCCGAACTTTGtcgggaggacgaattacgac                                                                                                                          <  7:77727‑M2/36‑21 (MQ=255)                                                                                                                                   gtcCTCCCGAACTTTGtcgggaggacgaattacgac                                                                                                                          >  8:77727‑M2/1‑16 (MQ=255)                                                                                                                                    tcctccCGAACTTTGtcgggaggacgaattacgacgaattacttagttttcagatcatttttaacgcttttcacaccatctaccgctttggcgatactttcagcacggtcactttgtgcctgagaatcgacggtaccggagagctgaac        <  1:109402‑M2/149‑135 (MQ=255)                                                                                                                                    tcctccCGAACTTTGtcgggaggacgaattacgacgaattacttagttttcagatcatttttaacgcttttcacaccatctaccgctttggcgatactttcagcacggtcactttgtgcctgagaatcgacggtaccggaga               >  7:22383‑M2/1‑15 (MQ=255)                                                                                                                                    tcctccCGAACTTTGtcgggaggacgaattacgacgaattacttagttttcagatcatttttaacgcttttcacaccatctaccgctttggcgatactttcagcacggtcactttgtgcctgagaatcgacggtaccggaga               <  8:22383‑M2/142‑128 (MQ=255)                                                                                                                                     cctccCGAcaaagttcgggaggacgaattacgacgaattacttagttttcagatcatttttaacgcttttcacaccatctaccgctttggcgatactttcagcacggtcactttgtgcctgagaatcgacggtaccggagagctgaacc       <  7:18679‑M1/149‑142 (MQ=255)                                                                                                                                         ccGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTCTGGTTATCGCGTTAATc   >  4:95765/1‑149 (MQ=255)                                                                                                                                          cGAACTTTGtcgggaggacgaattacgacgaattacttagttttcagatcatttttaacgcttttcacaccatctaccgctttggcgatactttcagcacggtcactttgtgcctgagaatcgacggtaccggagagctgaaccacgcc  >  2:109402‑M2/1‑9 (MQ=255)                                                                                                                                            |                                                                                                                                                   GGCGTGGTTCAGCTCTCCGGTACCGTCGATTCTCAGGCACAAAGTGACCGTGCTGAAAGTATCGCCAAAGCGGTAGATGGTGTGAAAAGCGTTAAAAATGATCTGAAAACTAAGTAATTCGTCGTAATTCGTCCTCCCGAACTTTGTCGGGAGGCGCGATGTGCACCACACTAAAAATATCGCATTGAGTGATTTTCACGCTCATATCAAGCGGTGACATTAACTATGGTAAAGGAGACGCTTATGTTTCGTTGGGGCATCATATTTCTGGTTATCGCGTTAATCG  >  NC_000913/4611885‑4612170

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.