| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3970088 = | 33 (0.960) | 4 (0.120) | 4/268 | 3.8 | 10.5% | intergenic (+11/‑45) | wzzE/wecB | Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein/UDP‑N‑acetyl glucosamine‑2‑epimerase |
| ? | NC_000913 | 3970114 = | 36 (1.080) | intergenic (+37/‑19) | wzzE/wecB | Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein/UDP‑N‑acetyl glucosamine‑2‑epimerase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGACGCAAACTTTAGCCTCAAAAAAAGGATCTTTTGCCAACGCATGCACCAACGGCGCCATCTTGATGGCTTCCGGGCGCGTACCAAATACAGTCAGTACTTTCACATCGATTCTCTTCGAATAAGCGGCGAGCGCCTTTGCGCTCACCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3970239‑3970088‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcTTATTCGAAGAGAATCGATGTGAAAG > NC_000913/3970114‑3970139 GTGACGCAAACTTTAGCCTCAAAAAAAGGATCTTTTGCCAACGCATGCACCAACGGCGCCATCTTGATGGCTTCCGGGCGCGTACCAAATACAGTCAGTACTTTCACATCGATTCTCTTCGAATAAGCGGCGAGCGCCTTTGCGCTCAC < 3:65339/149‑1GTGACGCAAACTTTAGCCTCAAAAAAAGGATCTTTTGCCAACGCATGCACCAACGGCGCCATCTTGATGGCTTCCGGGCGCGTACCAAATACAGTCAGTACTTTCACATCGATTCTCTTCGAATAAGCGGCGAGCGCCTTTGCGCTCAC > 4:103625/1‑149 GCATGCACCAACGGCGCCATCTTGATGGCTTCCGGGCGCGTACCAAATACAGTCAGTACTTTCACATCGATTCTCTTCGAATAAGCGGCGAGCGCCTTTGCGCTCACCGCTTAT > 7:111188/1‑114 GCATGCACCAACGGCGCCATCTTGATGGCTTCCGGGCGCGTACCAAATACAGTCAGTACTTTCACATCGATTCTCTTCGAATAAGCGGCGAGCGCCTTTGCGCTCACCGCTTAT < 8:111188/114‑1 TTCGAATAAGCGGCGAGCGCCTTTGCGCTCACCGCTTATTCGAAGAGAATCGATGTGAAAG > 7:58977/1‑61 TTCGAATAAGCGGCGAGCGCCTTTGCGCTCACCGCTTATTCGAAGAGAATCGATGTGAAAG < 8:58977/61‑1 GTGACGCAAACTTTAGCCTCAAAAAAAGGATCTTTTGCCAACGCATGCACCAACGGCGCCATCTTGATGGCTTCCGGGCGCGTACCAAATACAGTCAGTACTTTCACATCGATTCTCTTCGAATAAGCGGCGAGCGCCTTTGCGCTCACCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3970239‑3970088‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcTTATTCGAAGAGAATCGATGTGAAAG > NC_000913/3970114‑3970139 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |