New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2290113	NA (NA)	9 (0.260)	9/276	2.4	15.5%	noncoding (1/1195 nt)	IS5	repeat region
	?	NC_000913	3653478 =	49 (1.430)					pseudogene (248/483 nt)	yhiS	pseudogene
Rejected: Frequency below/above cutoff threshold.

AACCATTAATGACAACCTTTTACGAGCAAAAGCGGAAATTGCTTCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGA  >  NC_000913/3653335‑3653625                                                                                                                                                |                                                                                                                                                    aaCCATTAATGACAACCTTTTACGAGCAAAAGCGGAAATTGCTTCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTaaa                                                                                                                                                 <  7:126290/148‑1 (MQ=255)   ccATTAATGACAACCTTTTACGAGCAAAAGCGGAAATTGCTTCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGcc                                                                                                                                              >  2:13208/1‑149 (MQ=255)   ccATTAATGACAACCTTTTACGAGCAAAAGCGGAAATTGCTTCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGcc                                                                                                                                              <  6:77741/149‑1 (MQ=255)    cATTAATGACAACCTTTTACGAGCAAAAGCGGAAATTGCTTCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCt                                                                                                                                             >  8:110089/1‑149 (MQ=255)       tAATGACAACCTTTTACGAGCAAAAGCGGAAATTGCTTCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTa                                                                                                                                          >  6:117471/1‑149 (MQ=255)         aTGACAACCTTTTACGAGCAAAAGCGGAAATTGCTTCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTAc                                                                                                                                         <  1:13359/148‑1 (MQ=255)         aTGACAACCTTTTACGAGCAAAAGCGGAAATTGCTTCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTAc                                                                                                                                         >  2:57406/1‑148 (MQ=255)         aTGACAACCTTTTACGAGCAAAAGCGGAAATTGCATCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGAAATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTAc                                                                                                                                         >  2:88111/1‑148 (MQ=255)             cAACCTTTTACGAGCTAAAGCGGAAATTGCTTCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGaca                                                                                                                                     <  6:21436/148‑1 (MQ=255)             cAACCTTTTACGAGCAAAAGCGGAAATTGCTTCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCATTTACGacac                                                                                                                                    >  3:75437/1‑149 (MQ=255)              aaCCTTTTACGAGCAAAAGCGGAAATTGCTTCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCAAACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAAAGTTATAAGCAAGTTAAAGCCTTTACGACAct                                                                                                                                   >  8:81952/1‑149 (MQ=255)                ccTTTTACGAGCAAAAGCGGAAATTGCTTCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACActct                                                                                                                                 >  2:118283/1‑149 (MQ=255)                    ttACGAGCAAAAGCGGAAATTGCTTCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTcc                                                                                                                               <  5:117471/147‑1 (MQ=255)                    ttACGAGCAAAAGCGGAAATTGCTTCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTcc                                                                                                                               <  5:64757/147‑1 (MQ=255)                       cGAGCAAAAGCGGAAATTGCTTCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATa                                                                                                                          >  8:77262/1‑149 (MQ=255)                               aGCGGAAATTGCTTCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTCTCATACAATTACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATaaaa                                                                                                                  <  8:30994/149‑1 (MQ=255)                                         gCTTCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATg                                                                                                        >  7:22233/1‑149 (MQ=255)                                         aattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttagcaccttccTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATg                                                                                                        >  7:36032‑M2/104‑149 (MQ=255)                                          cTTCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATgg                                                                                                       <  1:13208/149‑1 (MQ=255)                                             cGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATggg                                                                                                      <  2:62280/147‑1 (MQ=255)                                               aCAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAg                                                                                                   >  5:46188/1‑148 (MQ=255)                                               aCAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAg                                                                                                   >  5:36619/1‑148 (MQ=255)                                               aCAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAg                                                                                                   >  5:98589/1‑148 (MQ=255)                                                tgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAAAGCCttt                                                                                                                                           >  3:22956‑M2/97‑107 (MQ=255)                                                tgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAAAGCCttt                                                                                                                                           <  4:22956‑M2/11‑1 (MQ=255)                                                 aataatTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGaaa                                                                                                <  7:77262/149‑1 (MQ=255)                                                  ataatTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAAt                                                                                               <  6:36619/149‑1 (MQ=255)                                                      ttAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCt                                                                                           <  1:57406/149‑1 (MQ=255)                                                           tttttAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAata                                                                                      >  3:24055/1‑149 (MQ=255)                                                                     ccAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGaa                                                                            <  8:22233/149‑1 (MQ=255)                                                                     ccAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGaa                                                                            <  4:24055/149‑1 (MQ=255)                                                                      cAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAg                                                                           >  2:96800/1‑149 (MQ=255)                                                                      actcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAg                                                                           <  8:36032‑M2/75‑1 (MQ=255)                                                                             aCCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTc                                                                     <  1:96800/148‑1 (MQ=255)                                                                              ccAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCa                                                                                                    <  8:65901/116‑1 (MQ=255)                                                                              ccAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCa                                                                                                    >  7:65901/1‑116 (MQ=255)                                                                               cAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTAttt                                                                      <  4:117402/145‑1 (MQ=255)                                                                               cAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTAttt                                                                      >  3:117402/1‑145 (MQ=255)                                                                                aaTCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATa                                                                 <  7:110089/149‑1 (MQ=255)                                                                                  ccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATAc                                                                >  6:48024‑M2/63‑148 (MQ=255)                                                                                      tCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACgaga                                                            <  1:1163/148‑1 (MQ=255)                                                                                              gctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAAcc                                                   >  6:61216‑M2/51‑149 (MQ=255)                                                                                                    atTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAAc                                                                                                           <  5:25018/87‑1 (MQ=255)                                                                                                    atTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAAc                                                                                                           >  6:25018/1‑87 (MQ=255)                                                                                                       aaaaTATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCaaaaaaaa                                          >  4:128924/1‑149 (MQ=255)                                                                                                       aaaaTATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCaaaaaaa                                           <  6:98589/148‑1 (MQ=255)                                                                                                           tatCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTc                                      <  3:128924/149‑1 (MQ=255)                                                                                                                gCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACACGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACga                                                              <  8:91773/120‑1 (MQ=255)                                                                                                                 cAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTg                                                                                          >  8:43468/1‑91 (MQ=255)                                                                                                                            aaGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTaa                     <  1:88111/149‑1 (MQ=255)                                                                                                                                cAATTTTATAAGAAAGTTAAAGCCTTTACGACACTCTCCCGATACAATATAATTCAAACATGGGCAGAAATGTCTGaa                                                                                        <  8:81077/78‑1 (MQ=255)                                                                                                                                   tGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGcc              <  6:46188/149‑1 (MQ=255)                                                                                                                                   tGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGc               >  4:57484/1‑148 (MQ=255)                                                                                                                                     ttATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCa             <  7:81952/148‑1 (MQ=255)                                                                                                                                            ttccTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATCTCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAaga                  <  7:98753‑M2/132‑1 (MQ=255)                                                                                                                                            ttccTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAaga                  >  8:98753‑M2/5‑136 (MQ=255)                                                                                                                                              ccTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTaa     <  5:48024‑M2/145‑1 (MQ=255)                                                                                                                                               gTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGa  <  4:75437/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                    AACCATTAATGACAACCTTTTACGAGCAAAAGCGGAAATTGCTTCGACAATAATTAAATTTTTAGAGGCCAGGATAACCAATCTTTCATACAATGACATATTAAAATATCAGCAAGAATTCCAAAGACAATGTTATAAGCAAGTTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGA  >  NC_000913/3653335‑3653625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.