Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,625,592 Δ95,041 bp IS150‑mediated yhhJ[mokA] 82 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3625592 3720632 95041 30 [0] [0] 28 yhhJ–[mokA] yhhJ,rbbA,yhiI,yhiJ,yhiL,yhiL,yhiM,yhiN,pitA,uspB,uspA,dtpB,rsmJ,prlC,rlmJ,gor,dinQ,agrA,agrB,arsR,arsB,arsC,yhiS,insH1,yhiS,slp,dctR,yhiD,hdeB,hdeA,hdeD,arrS,gadE,mdtE,mdtF,gadW,gadY,gadX,gadA,yhjA,treF,yhjB,yhjC,yhjD,yhjE,yhjG,yhjH,kdgK,yhjJ,dctA,yhjK,bcsC,bcsZ,bcsB,bcsA,bcsQ,yhjR,bcsE,bcsF,bcsG,ldrD,rdlD,yhjV,dppF,dppD,dppC,dppB,dppA,proK,eptB,yhjX,yhjY,tag,yiaC,bisC,yiaD,ghrB,yiaF,yiaG,cspA,hokA,[mokA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 36255910 (0.000)28 (0.720) 24/278 0.8 100% noncoding (3/82 nt) RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 3720633 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

ATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTC  >  NC_000913/3720487‑3720765
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aagatgcgaaaagcagccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTg                                                                                                                                     >  4:15052‑M2/147‑148 (MQ=255)
       gaaaagcagccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCAc                                                                                                                             >  2:106459‑M2/140‑149 (MQ=255)
            gcagccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCAtt                                                                                                                        <  6:123487‑M2/15‑1 (MQ=255)
                ccatggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTttgt                                                                                                                    <  3:129308‑M2/19‑1 (MQ=255)
                 catggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTttgtt                                                                                                                   <  8:44918‑M2/20‑1 (MQ=255)
                 catggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTttgtt                                                                                                                   <  3:78539‑M2/20‑1 (MQ=255)
                  atggacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTttgttg                                                                                                                  <  1:106459‑M2/21‑1 (MQ=255)
                  atggacagaaactatctggcggcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTttgttg                                                                                                                  <  8:141115‑M2/21‑1 (MQ=255)
                     gacagaaactatctggcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGa                                                                                                                <  7:6638‑M2/23‑1 (MQ=255)
                                    gcgtcagtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa                                                                                                   <  4:83460‑M2/36‑1 (MQ=255)
                                          gtccttgcggggagcgggctttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATg                                                                                                      <  3:82979‑M2/33‑1 (MQ=255)
                                                             tttcgtaatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAACGGAATAGCCCCTAATATGTCAAAGCCAAAATa                                                                       >  7:59993‑M2/86‑149 (MQ=255)
                                                                  taatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtt                                                                  >  8:26061‑M2/81‑149 (MQ=255)
                                                                  taatcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtt                                                                  >  1:69510‑M2/81‑149 (MQ=255)
                                                                     tcttgccctgaatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtttt                                                                >  5:115748‑M2/78‑148 (MQ=255)
                                                                               aatacaggactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAgcgc                                                       <  6:115748‑M2/80‑1 (MQ=255)
                                                                                      gactgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTc                                              <  3:26795‑M2/89‑1 (MQ=255)
                                                                                        ctgagtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGt                                            <  3:15052‑M2/91‑1 (MQ=255)
                                                                                            gtatcaaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAAt                                        >  1:61105‑M2/55‑149 (MQ=255)
                                                                                                 aaaaagccggttaactgaaactgtccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCact                                    <  1:100926‑M2/99‑1 (MQ=255)
                                                                                                                        tccaggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACa            <  2:69510‑M2/123‑1 (MQ=255)
                                                                                                                          caggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAg           >  5:159412‑M2/25‑148 (MQ=255)
                                                                                                                           aggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGaa                                         <  6:149751‑M2/94‑1 (MQ=255)
                                                                                                                           aggttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGaa                                         >  5:149751‑M2/24‑117 (MQ=255)
                                                                                                                              ttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGatca      >  6:47358‑M2/21‑149 (MQ=255)
                                                                                                                              ttttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGatca      >  4:107343‑M2/21‑149 (MQ=255)
                                                                                                                                ttgggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGatcat     <  2:61105‑M2/130‑1 (MQ=255)
                                                                                                                                  gggggtcagttcataaTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCAtctc  >  5:77655‑M2/17‑149 (MQ=255)
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ATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTC  >  NC_000913/3720487‑3720765

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: