mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 36.0% | 130.8 / 135.4 | 142 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 380,013 | 0 | G | . | 24.0% | 60.8 / 17.6 | 26 | intergenic (‑132/+56) | frmR/yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| Marginal new junction evidence (lowest skew 10 of 74 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 910890 = | 3874 (41.160) | 62 (0.690) | 27/270 | 2.3 | 1.7% | coding (160/1719 nt) | poxB | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding |
| ? | NC_000913 | 910910 = | 3529 (39.450) | coding (140/1719 nt) | poxB | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding | |||||
| * | ? | NC_000913 | 909159 = | 3722 (39.540) | 38 (0.420) | 20/270 | 3.2 | 1.1% | coding (136/1002 nt) | ltaE | L‑allo‑threonine aldolase, PLP‑dependent |
| ? | NC_000913 | 909184 = | 3616 (40.420) | coding (111/1002 nt) | ltaE | L‑allo‑threonine aldolase, PLP‑dependent | |||||
| * | ? | NC_000913 | = 909154 | 3716 (39.480) | 30 (0.330) | 20/274 | 3.2 | 0.81% | coding (141/1002 nt) | ltaE | L‑allo‑threonine aldolase, PLP‑dependent |
| ? | NC_000913 | = 909188 | 3726 (41.040) | coding (107/1002 nt) | ltaE | L‑allo‑threonine aldolase, PLP‑dependent | |||||
| * | ? | NC_000913 | = 911155 | NA (NA) | 28 (0.320) | 19/266 | 3.3 | NA | noncoding (9/26 nt) | REP84 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP84 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 911163 | NA (NA) | noncoding (17/26 nt) | REP84 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP84 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 908134 = | 3982 (42.300) | 29 (0.320) | 19/272 | 3.4 | 0.76% | coding (149/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase |
| ? | NC_000913 | 908153 = | 3754 (41.650) | coding (130/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase | |||||
| * | ? | NC_000913 | 908136 = | 3932 (41.770) | 16 (0.180) | 13/270 | 4.5 | 0.43% | coding (147/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase |
| ? | NC_000913 | 908158 = | 3652 (40.820) | coding (125/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase | |||||
| * | ? | NC_000913 | = 909560 | 3215 (34.160) | 19 (0.210) | 13/276 | 4.6 | 0.60% | coding (1490/1719 nt) | poxB | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding |
| ? | NC_000913 | = 909583 | 3155 (34.500) | coding (1467/1719 nt) | poxB | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding | |||||
| * | ? | NC_000913 | = 909892 | 3903 (41.460) | 16 (0.170) | 12/276 | 4.8 | 0.42% | coding (1158/1719 nt) | poxB | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding |
| ? | NC_000913 | = 909901 | 3884 (42.470) | coding (1149/1719 nt) | poxB | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding | |||||
| * | ? | NC_000913 | 906657 = | 3876 (41.180) | 15 (0.170) | 12/274 | 4.8 | 0.40% | coding (97/1014 nt) | ybjS | putative NAD(P)H‑dependent oxidoreductase |
| ? | NC_000913 | 906675 = | 3677 (40.500) | coding (79/1014 nt) | ybjS | putative NAD(P)H‑dependent oxidoreductase | |||||
| * | ? | NC_000913 | 907136 = | 3810 (40.480) | 15 (0.170) | 11/274 | 5.1 | 0.40% | coding (1147/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase |
| ? | NC_000913 | 907179 = | 3723 (41.010) | coding (1104/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase | |||||