New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4271029126 (1.600)7 (0.100) 7/234 NT 5.4% intergenic (+15/+20) yjbR/uvrA DUF419 family protein/ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC
?NC_000913 = 4271034 128 (1.750)intergenic (+20/+15) yjbR/uvrA DUF419 family protein/ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC

GAATAAAGCGCACTGGAGCACCGTGTATCTCGACGGTTCGCTGCCAGATTCGCAAATCTATTATCTGGTGGATGCGTCTTATCAGCAGGCGGTGAATTTACTGCCGGAAGAAAAACGTAAATTGCTGGTGCAACTCTGAAAGGAAAAGGCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4270876‑4271029
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggccgctTTCTGAGCGGCCTTTTCCTTTCAGAGTTGCACCAGCAATTTACGTTTTTCTTCCGGCAGTAAATTCACCGCCTGCTGATAAGACGCATCCACCAGATAATAGATTTGCGAATCTGGCAGCGAACCGTCGAGATACACGGTGCTCCAGT  <  NC_000913/4271034‑4270887
                                                                                                                                                                                                                                                                                                              
GAATAAAGCGCACTGGAGCACCGTGTATCTCGACGGTTCGCTGCCAGATTCGCAAATCTATTATCTGGTGGATGCGTCTTATCAGCAGGCGGTGAATTTACTGCCGGAAGAAAAACGTAAATTGCTGGTGCAACTCTGAAAGGAAAAGG                                                                                                                                                           >  4:293470/1‑149
GAATAAAGCACACTGGAGCACCGTGTATCTCGACGGTTCGCTGCCAGATTCGCAAATCTATTATCTGGTGGATGCGTCTTATCAGCAGGCGGTGAATTTACTGCCGGAAGAAAAACGTAAATTGCTGGTGCAACTCTGAAAGGAAAAGG                                                                                                                                                           >  7:86356/1‑149
 AATAAAGCGCCCTGGAGCACCGTGTATCTCGACGGATCGCTGCCAGATTCGCAAATCTATTATCTGGTGGATGCGTCTTATCAGCAGGCGGTGAATTTACTGCCGGAAGAAAAACGTAAATTGCTGGTGCAACTCTGAAAGGAAA                                                                                                                                                              <  5:228877/145‑1
 AATAAAGCGCACTGGAGCACCGTGTATCTCGACGGTTCTCTGCCAGATTCGCAAATCTATTATCTGGTGGATGCGTCTTATCAGCAGGCGGTGAATTTACTGCCTGAAGAAAAACGTAAATTGCTGGTGCAACTCTGAAAGGAAAA                                                                                                                                                             <  7:342679/146‑1
 AATAAAGCGCACTGGAGCACCGTGTATCTCGACGGTTCGCTGCCAGATTCGCAAATCTATTATCTGGTGGATGCGTCTTATCAGCAGGCGGTGAATTTACTGCCGGAAGAAAAACGTAAATTGCTGGTGCAACTCTGAAAGGAAAAGGC                                                                                                                                                          <  3:197388/149‑1
      AGCGCACTGGAGCACCGTGTATCTCGACGGTTCGCTGCCAGATTCGCAAATCTATTATCTGGTGGATGCGTCTTATCAGCAGGCGGTGAATTTACTGCCGGAAGAAAAACGTAAATTGCTGGTGCAACTCTGAAAGGAAAAGGCCGCT                                                                                                                                                      >  8:88920/1‑148
      AGCGCACTGGAGCACCGTGTATCTCGACGGTTCGCTGCCAGATTAGCAAATCTATTATCTGGTGGATGCGTCTTATCAGCAGGCGGTGAATTTACTGCCGGAAGAAAAACGTAAATTGCTGGTGCAACTCTGAAACGAAAAGGCCGCT                                                                                                                                                      >  1:160764/1‑148
                    CCGTGTATCTCGACGGTTCGCTGCCAGATTCGCAAATCTATTATCTGGTGGATGCGTCTTATCAGCAGGCGGTGAATTTACTGCCGGAAGAAAAACGTAAATTGCTGGTGCAACTCTGAAAGGAAAA                                                                                                                                                             <  1:383791/127‑1
                    CCGTGTATCTCGACGGTTCGCTGCCAGATTCGCAAATCTATTATCTGGTGGATGCGTCTTATCAGCAGGCGGTGAATTTACTGCCGGAAGAAAAACGTAAATTGCTGGTGCAACTCTGAAAGGAAAA                                                                                                                                                             >  2:383791/1‑127
                             TCGACGGTTCGCTGCCAGATTCGCAAATCTATTATCTGGTGGATGCGTCTTATCAGCAGGCGGTGAATTTACTGCCGGAAGAAAAACGTAAATTGCTGGTGCAACTCTGAAAGGAAAAGGCCGCTTTCTGAGCGGCCTTTTCCT                                                                                                                                   <  5:165323/144‑1
                             TCGACGGTTCGCTGCCAGATTCGCAAATCTATTATCTGGTGGATGCGTCTTATCAGCAGGCGGTGAATTTACTGCCGGAAGAAAAACGTAAATTGCTGGTGCAACTCTGAAAGGAAAAGGCCGCTTTCTGAGCGGCCTTTTCCT                                                                                                                                   >  6:165323/1‑144
                               GACGGTTCGCTGCCAGATTCGCAAATCTATTATCTGGTGGATGCGTCTTATCAGCAGGCGGTGAATTTACTGCCGGAAGAAAAACGTAAATTGCTGGTGCAACTCTGAAAGGAAAAGGCCGCTTTCTGAGCGGCCTTTTCCTTTCA                                                                                                                               <  7:57376/146‑1
                                                          TATTATCTGGTGGATGCGTCTTATCAGCAGGCGGTGAATTTACTGCCGGAAGAAAAACGTAAATTGCTGGTGCAACTCTGAAAGGAAAAGGCCGCTTTCTGAGCGGCCTTTTCCTTTCAGAGTTGCACCAGCAATTTACGTTTTTCTTC                                                                                                 >  4:17728/1‑149
                                                                    TGGATGCGTCTTATCAGCAGGCGGTGAATTTACTGCCGGAAGAAAAACCTAAATTGCTGGTGCAACTCTGAAAGGAAAAGGCCGCTTTCTGAGCGGCCTTTTCCTTTCAGAGTTGCACCAGCAATTTACGTTTTTCTTCCGGCAGTAAA                                                                                       <  3:17728/149‑1
                                                                        TGCGTCTTATCAGCAGGCGGTGAATTTACTGCCGGAAGAAAAACGTAAATTGCTGGTGCAACTCTGAAAGGAAAAGGCCGCTTTCTGAGCGGCCTTTTCCTTTCAGA                                                                                                                             >  1:275288/1‑107
                                                                        TGCGTCTTATCAGCAGGCGGTGAATTTACTGCCGGAAGAAAAACGTAAATTGCTGGTGCAACTCTGAAAGGAAAAGGCCGCTTTCTGAGCGGCCTTTTCCTTTCAGA                                                                                                                             <  2:275288/107‑1
                                                                                        GCGGTGAATTTACTGCCGGAAGAAAAACGTAAATTGCTGGTGCAACTCTGAAAGGAAAA                                                                                                                                                             >  7:295729/1‑59
                                                                                        GCGGTGAATTTACTGCCGGAAGAAAAACGTAAATTGCTGGTGCAACTCTGAAAGGAAAA                                                                                                                                                             <  8:295729/59‑1
                                                                                                                                                 AAGGCCGCTTTCTGAGCGGCCTTTTCCTTTCAGAGTTGCACCAGCAATTTACGTTTTTCTTCCGGCAGTAAATTCACCGCCTGCTGATAAGACGCATCCACCAGATAATAGATTTGCGAATCTGGCAGCGAACCGTCGAGATACACGG           <  3:70510/148‑1
                                                                                                                                                   GGCCGCTTTCTGAGCGGCCTTTTCCTTTCAGAGTTGCACCAGCAATTTACGTTTTTCTTCCGGCAGTAAATTCACCGCCTGCTGATAAGACGCATCCACCAGATAATAGATTTGCGAATCTGGCAGCGAACCGTCGAGATACACGGTGC        >  8:289401/1‑149
                                                                                                                                                   GGCCGCTTTCTGAGCGGCCTTTTCCTTTCAGAGTTGCACCAGCAATTTACGTTTTTCTTCCGGCAGTAAATTCACCGCCTGCTGATAAGACGCATCCACCAGATAATAGATTTGCGAATCTGGCAGCGAACCGTCGA                    >  5:334181/1‑137
                                                                                                                                                   GGCCGCTTTCTGAGCGGCCTTTTCCTTTCAGAGTTGCACCAGCAATTTACGTTTTTCTTCCGGCAGTAAATTCACCGCCTGCTGATAAGACGCATCCACCAGATAATAGATTTGCGAATCTGGCAGCGAACCGTCGA                    <  6:334181/137‑1
                                                                                                                                                    GCCGCTTTCTGAGCGGCCTTTTCCTTTCAGAGTTGCACCAGCAATTTACGTTTTTCTTCCGGCAGTAAATTCACCGCCTGCTGATAAGACGCATCCACCAGATAATAGATTTGCGAATCTGGCAGCGAACCGTCGAGATACACGGTGCT       <  2:233043/149‑1
                                                                                                                                                     CCGCTTTCTGAGCGGCCTTTTCCTTTCAGAGTTGCACCAGCAATTTACGTTTTTCTTCCGGCAGTAAATTCACCGCCTGCTGATAAGACGCATCCACCAGATAATAGATTTGCGAATCTGGCAGCGAACCGTCGAGATACACGGTGCTC      <  7:270103/149‑1
                                                                                                                                                     CCGCTTTCTGAGCGGCCTTTTCCTTTCAGAGTTGCACCAGCAATTTACGTTTTTCTTCCGGCAGTAAATTCACCGCCTGCTGATAAGACGCATCCACCAGATAATAGATTTGCGAATCTGGCAGCGAACCGTCGAGATACACGGTGCTC      <  4:351489/149‑1
                                                                                                                                                         TTTCTGAGCGGCCTTTTCCTTTCAGAGTTGCACCAGCAATTTACGTTTTTCTTCCGGCAGTAAATTCACCGCCTGCTGATAAGACGCATCCACCAGATAATAGATTTGCGAATCTGGCAGCGAACCGTCGAGATACACGGTGCTCCAGT  >  7:88920/1‑149
                                                                                                                                                         TTTCTGAGCGGCCTTTTCCTTTCAGAGTTGCACCAGCAATTTACGTTTTTCTTCCG                                                                                               <  5:278284/56‑1
                                                                                                                                                         TTTCTGAGCGGCCTTTTCCTTTCAGAGTTGCACCAGCAATTTACGTTTTTCTTCCG                                                                                               >  6:278284/1‑56
                                                                                                                                                                                                                                                                                                              
GAATAAAGCGCACTGGAGCACCGTGTATCTCGACGGTTCGCTGCCAGATTCGCAAATCTATTATCTGGTGGATGCGTCTTATCAGCAGGCGGTGAATTTACTGCCGGAAGAAAAACGTAAATTGCTGGTGCAACTCTGAAAGGAAAAGGCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4270876‑4271029
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggccgctTTCTGAGCGGCCTTTTCCTTTCAGAGTTGCACCAGCAATTTACGTTTTTCTTCCGGCAGTAAATTCACCGCCTGCTGATAAGACGCATCCACCAGATAATAGATTTGCGAATCTGGCAGCGAACCGTCGAGATACACGGTGCTCCAGT  <  NC_000913/4271034‑4270887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.