New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4306837	150 (1.900)	5 (0.070)	4/230	NT	3.4%	intergenic (‑240/+33)	yjcS/alsK	metallo‑beta‑lactamase superfamily protein/D‑allose kinase
	?	NC_000913	= 4306852	144 (2.000)					intergenic (‑255/+18)	yjcS/alsK	metallo‑beta‑lactamase superfamily protein/D‑allose kinase
Rejected: Frequency below/above cutoff threshold.

AAATTGCGACTTTAATAAGTGGAAGTGTGAGCGGAACGCGCCATTTTATTAGGCATTTGTGCTGAAGAGGGAAAATTACAGTAAAACTATCATTGCAGAAAATAATATGAGTCGTTTTATGTGTTTATTATATATATTGTACCTGTCGTTGGCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4306681‑4306837 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttggcacagTAGCGCAATGTCCCGCTGTGCCAACGACAGGTACAATATATATAATAAACACATAAAACGACTCATATTATTTTCTGCAATGATAGTTTTACTGTAATTTTCCCTCTTCAGCACAAATGCCTAATAAAATGGCGCGTTCCGCTCA  <  NC_000913/4306852‑4306708                                                                                                                                                                                                                                                                                                                AAATTGCGACTTTAATAAGTGGAAGTGTGAGCGGAACGCGCCATTTTATTAGGCATTTGTGCTGAAGAGGGAAAATTACAGTAAAACTATCATTGCAGAAAATAATATGAGTCGTTTTATGTGTTTATTATATATATTGTACCTGTCGT                                                                                                                                                           <  7:325929/149‑1   ATTGCGACTTTAATAAGTGGAAGTGTGAGCGGAACGCGCCATTTTATTAGGCATTTGTGCTGAAGAGGGAAAATTACAGTAAAACTATCATTGCAGAAAATAATATGAGTCGTTTTATGTGTTTATTATATATATTGTACCTGTCGTTG                                                                                                                                                         <  8:4750/149‑1   ATTGCGACTTTAATAAGTGGAAGTGTGAGCGGAACGCGCCATTTTATTAAGCATTTGTGCTGAAGAGGGAAAATTACAGTAAAACTATCATTGCAGAAAATAATATGAGTCGTTTTATGTGTTTATTATATATATTGTACCTGTCGTTG                                                                                                                                                         <  8:307583/149‑1    TTGCGACTTTAATAAGTGGAAGTGTGAGCGGAACGCGCCATTTTATTAGGCATTTGTGCTGAAGAGGGAAAATTACAGTAAAACTATCATTGCAGAAAATAATATGAGTCGTTTTATGTGTTTATTATATATATTGTACCTGTCGTTGG                                                                                                                                                        >  7:174376/1‑149                            TGAGCGGAACGCGCCATTTTATTAGGCATTTGTGCTGAAGAGGGAAAATTACAGTAAAACTATCATTGCAGAAAATAATATGAGTCGTTTTATGTGTTTATTATATATATTGTACCTGTCGTTGG                                                                                                                                                        <  8:105706/125‑1                                 GGAACGCGCCATTTTATTAGGCATTTGTGCTGAAGAGGGAAAATTACAGTAAAACTATCATTGCAGAAAATAATATGAGTCGTTTTATGTGTTTATTATATATATTGTACCTGTCGTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAA                                                                                                                           <  6:61642/149‑1                                                                                AGTAAAACTATCATTGCAGAAAATAATATGAGTCGTTTTATGTGTTTATTATATATATTGTACCTGTCGTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGACAG                                                                                                                     >  8:328362/1‑108                                                                                AGTAAAACTATCATTGCAGAAAATAATATGAGTCGTTTTATGTGTTTATTATATATATTGTACCTGTCGTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGACAG                                                                                                                     <  7:328362/108‑1                                                                                  TAAAACTATCATTGCAGAAAATAATATGAGTCGTTTTATGTGTTTATTATATATATTGTACCTGTCGTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAA                                                                                                                           <  3:128949/100‑1                                                                                  TAAAACTATCATTGCAGAAAATAATATGAGTCGTTTTATGTGTTTATTATATATATTGTACCTGTCGTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAA                                                                                                                           >  4:128949/1‑100                                                                                                                                                   CGTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGACAGGTACAATATATATAATAAACACATAAAACGACTCATATTATTTTCTGCAATGATAGTTTTACTGTAATTTTCCCTCTTCAGCACAAATGCCTAATAAAATGGCGCGTT         >  7:282425/1‑149                                                                                                                                                   CGTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGACAGGTACAATATATATAATAAACACATAAAACGACTCATATTATTTTCTGCAATGATAGTTTTACTGTAATTTTCCCTCTTCAGCACAAATGCCTAATAAAATGGCGCGTT         <  7:188051/149‑1                                                                                                                                                    GTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGACAGGTACAATATATATAATAAACACATAAAACGACTCATATTATTTTCTGCAATGATAGTTTTACTGTAATTTTCCCTCTTCAGCACAAATGCCTAATAAAATGGCGCGTTC        >  1:289615/1‑149                                                                                                                                                    GTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGACAGGTACAATATATATAATAAACACATAAAACGACTCATATTATTTTCTGCAATGATAGTTTTACTGTAATTTTCCCTCTTCAGCACAAATGCCTAATAAAATGGCGCGTTC        >  1:294770/1‑149                                                                                                                                                    GTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGACAGGTACAATATATATAATAAACACATAAAACGACTCATATTATTTTCTGCAATGATAGTTTTACTGTAATTTTCCCTCTTCAGCACAAAT                             >  7:91366/1‑128                                                                                                                                                    GTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGACAGGTACAATATATATAATAAACACATAAAACGACTCATATTATTTTCTGCAATGATAGTTTTACTGTAA                                                  <  2:359204/107‑1                                                                                                                                                    GTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGACAGGTACAATATATATAATAAACACATAAAACGACTCATATTATTTTCTGCAATGATAGTTTTACTGTAA                                                  >  1:359204/1‑107                                                                                                                                                     TTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGACAGGTACAATATATATAATAAATACATAAAACGACTCATATTATTTTCTGCAATGATAGTTTTACTGTAATTTTCCCTCTTCAGCACAAATGCCTAATAAAATGGCGCGTTCC       >  6:202870/1‑149                                                                                                                                                        GCACAGTAGCGCAATGTCCCGCTGTGCCAACGACAGGTACAATATATATAATAAACACATAAAACGACTCATATTATTTTCTGCAATGATAGTTTTACTGTAATTTTCCCTCTTCAGCACAAATGCCTAATAAAATGGCGCGTTCCGCT    >  4:141815/1‑149                                                                                                                                                         CACAGTAGCGCAATGTCCCGCTGTGCCAACGACAGGTACAATATATATAATAAACACATAAAACGACTCATATTATTTTCTGCAATGATAGTTTTACTGTAATTTTCCCTCTTCAGCACAAATGCCTAATAAAATGGCGCGTTCCGCTC   <  3:141815/149‑1                                                                                                                                                          ACAGTAGCGCAATGTCCCGCTGTGCCAACGACAGGTACAATATATATAATAAACACATAAAACGACTCATATTATTTTCTGCAATGATAGTTTTACTGTAATTTTCCCTCTTCAGCACAAATGCCTAATAAAATGGCGCGTTCCGCTCA  <  2:285765/149‑1                                                                                                                                                          ACAGTAGCGCAATGTCCCGCTGTGCCAACGACAGGTACAATATATATAATAAACACATAAAACGACTCATATTATTTTCTGCAATGATAGTTTTACTGTAATTTTCCCTCTTCAGCACAAATGCCTAATAAAATGGCGCGTTCCGCTCA  <  8:233881/149‑1                                                                                                                                                                                                                                                                                                                AAATTGCGACTTTAATAAGTGGAAGTGTGAGCGGAACGCGCCATTTTATTAGGCATTTGTGCTGAAGAGGGAAAATTACAGTAAAACTATCATTGCAGAAAATAATATGAGTCGTTTTATGTGTTTATTATATATATTGTACCTGTCGTTGGCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4306681‑4306837 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttggcacagTAGCGCAATGTCCCGCTGTGCCAACGACAGGTACAATATATATAATAAACACATAAAACGACTCATATTATTTTCTGCAATGATAGTTTTACTGTAATTTTCCCTCTTCAGCACAAATGCCTAATAAAATGGCGCGTTCCGCTCA  <  NC_000913/4306852‑4306708

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.