New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3676971 =	12 (0.150)	3 (0.040)	3/238	NT	22.8%	coding (1380/2061 nt)	yhjG	putative inner membrane‑anchored periplasmic AsmA family protein
	?	NC_000913	3677025 =	9 (0.120)					coding (1326/2061 nt)	yhjG	putative inner membrane‑anchored periplasmic AsmA family protein

TTTCCCCCAGCGTCTTCTGCATCAGTTCCACATCGGGCATCAGTTCTTTCAGTTTCAGTCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGCCATGCTCAATGCGCCGCCCTTTGAAGCGAACAT  >  NC_000913/3676844‑3677104                                                                                                                                |                                                                                                                                      tttCCCCCAGCGTCTTCTGCATCAGTTCCACATCGGGCATCAGTTCTTTCAGTTTCAGTCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGcc                                                                                                                   >  3:130029/1‑148 (MQ=255)    ttatgaccgcttcgaaaccgataaatgggacgttatggatgccgatgttcgcttcaaagggcggcgcattgagcatggcagtagcctgccgattagcgatctttctactcatatcatcctcaaaAAtgct                                                                                                                                  >  8:151138‑M1/125‑130 (MQ=255)    ttatgaccgcttcgaaaccgataaatgggacgttatggatgccgatgttcgcttcaaagggcggcgcattgagcatggcagtagcctgccgattagcgatctttctactcatatcatcctcaaaAAtgct                                                                                                                                  <  7:151138‑M1/6‑1 (MQ=255)     ccccAGCGTCTTCTGCATCAGTTCCACATCGGGCATCAGTTCTTTCAGTTTCAGTCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAAt                                                                                                               <  2:107786/148‑1 (MQ=255)     ccccAGCGTCTTCTGCATCAGTTCCACATCGGGCATCAGTTCTTTCAGTTTCAGTCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAAt                                                                                                               >  1:107786/1‑148 (MQ=255)                                    ggCATCAGTTCTTTCAGTTTCAGTCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCAttttt                                                                               >  7:206465/1‑149 (MQ=255)                                      cATCAGTTCTTTCAGTTTCGGTCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGa                                                                             <  3:19461/149‑1 (MQ=255)                                       tggatgccgatgttcgcttcaaagggcggcgcattgagcatggcagtagcctgccgattagcgatctttctactcatatcatcctcaaaAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGa                                                                             >  6:6963‑M1/90‑148 (MQ=255)                                                           tCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCa                                                                                                           <  3:186100/98‑1 (MQ=255)                                                           tCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCa                                                                                                           >  4:186100/1‑98 (MQ=255)                                                                   ccTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATc                                                <  8:206465/149‑1 (MQ=255)                                                                     tGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCt                                                    >  4:216963/1‑143 (MQ=255)                                                                     tGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCt                                                    <  3:216963/143‑1 (MQ=255)                                                                             catggcagtagcctgccgattagcgatctttctactcatatcatcctcaaaAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGatat                                                                    <  7:63157‑M1/68‑1 (MQ=255)                                                                             catggcagtagcctgccgattagcgatctttctactcatatcatcctcaaaAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGatat                                                                    >  8:63157‑M1/52‑119 (MQ=255)                                                                                ccgcccCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGc                                   <  4:130029/149‑1 (MQ=255)                                                                                                                 aTGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGCCATGCTCAATGCGCCGCCCTTTGAAGCGAACAt  >  7:382473/1‑149 (MQ=255)                                                                                                                                |                                                                                                                                      TTTCCCCCAGCGTCTTCTGCATCAGTTCCACATCGGGCATCAGTTCTTTCAGTTTCAGTCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGCCATGCTCAATGCGCCGCCCTTTGAAGCGAACAT  >  NC_000913/3676844‑3677104

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.