New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4189595 =87 (1.100)4 (0.060) 4/232 NT 4.7% intergenic (+22/‑191) rpoC/yjaZ RNA polymerase, beta prime subunit/stationary phase growth adaptation protein
?NC_000913 4189619 = 83 (1.140)intergenic (+46/‑167) rpoC/yjaZ RNA polymerase, beta prime subunit/stationary phase growth adaptation protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 104 total aligned reads displayed.

AGGATCGTATGCGTCGCCGTGCTGCGGGTGAAGCTCCGGCTGCACCGCAGGTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACTAATATCCTGAAACTGACTGAACTAATTGAGTCAAACTCGGC  >  NC_000913/4189449‑4189741
                                                                                                                                                  |                                                                                                                                                  
aGGATCGTATGCGTCGCCGTGCTGCGGGTGAAGCTCCGGCTGCACCGCAGGTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTaaa                                                                                                                                                  <  7:220037/149‑1 (MQ=255)
 acaggaatagtatcgaatccttgccgagtttgactcaattagttcagtcagtttcaggatattagtcatctctacattgattatgagtattcagaaattccttaaatattctgacaaatgctctttccctaaactccccccataaaaa                                                                                                                                                  <  7:40585‑M1/3‑1 (MQ=255)
   aggaatagtatcgaatccttgccgagtttgactcaattagttcagtcagtttcaggatattagtcatctctacattgattatgagtattcagaaattccttaaatattctgacaaatgctctttccctaaactccccccataaAAAAAc                                                                                                                                               <  5:218888‑M1/6‑1 (MQ=255)
     gaatagtatcgaatccttgccgagtttgactcaattagttcagtcagtttcaggatattagtcatctctacattgattatgagtattcagaaattccttaaatattctgacaaatgctctttccctaaactccccccataaAAAAAccc                                                                                                                                             <  7:273547‑M1/8‑1 (MQ=255)
     gaatagtatcgaatccttgccgagtttgactcaattagttcagtcagtttcaggatattagtcatctctacattgattatgagtattcagaaattccttaaatattctgacaaatgctctttccctaaactccccccataaAAAAAccc                                                                                                                                             >  3:152579‑M1/142‑149 (MQ=255)
      gTATGCGTCGCCGTGCTGCGGGTGAAGCTCCGGCTGCACCGCAGGTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAAccc                                                                                                                                             <  5:343239/148‑1 (MQ=255)
       atagtatcgaatccttgccgagtttgactcaattagttcagtcagtttcaggatattagtcatctctacattgattatgagtattcagaaattccttaaatattctgacaaatgctctttccctaaactccccccataaAAAAACCCg                                                                                                                                            >  1:148357‑M1/140‑148 (MQ=255)
             tcgaatccttgccgagtttgactcaattagttcagtcagtttcaggatattagtcatctctacattgattatgagtattcagaaattccttaaatattctgacaaatgctctttccctaaactccccccataaAAAaaccctc                                                                                                                                           >  6:115851‑M1/134‑141 (MQ=255)
             tcgaatccttgccgagtttgactcaattagttcagtcagtttcaggatattagtcatctctacattgattatgagtattcagaaattccttaaatattctgacaaatgctctttccctaaactccccccataaAAAaaccctc                                                                                                                                           <  5:115851‑M1/10‑3 (MQ=255)
                            tGAAGCTCCGGCTGCACCGCAGGTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATggg                                                                                                                      <  6:7643/149‑1 (MQ=255)
                            tGAAGCTCCGGCTGCACCGCAGGTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATggg                                                                                                                      <  5:303765/149‑1 (MQ=255)
                            tGAAGCTCCGGCTGCACCGCAGGTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATgg                                                                                                                       >  6:74415/1‑148 (MQ=255)
                            tGAAGCTCCGGCTGCACCGCAGGTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATgg                                                                                                                       <  5:74415/148‑1 (MQ=255)
                                 cTCCGGCTGCACCGCAGGTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAg                                                                                                                 >  5:9116/1‑149 (MQ=255)
                                 cTCCGGCTGCACCGCAGGTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAg                                                                                                                 >  8:285124/1‑149 (MQ=255)
                                    cGGCTGCACCGCAGGTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATgggg                                                                                                                     <  3:15203/142‑1 (MQ=255)
                                    cGGCTGCACCGCAGGTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATgggg                                                                                                                     >  4:15203/1‑142 (MQ=255)
                                      gCTGCACCGCAGGTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAg                                                                                                            >  7:63569/1‑149 (MQ=255)
                                           aCCGCAGGTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATg                                                                                                                        <  2:280278/132‑1 (MQ=255)
                                           aCCGCAGGTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATg                                                                                                                        >  1:280278/1‑132 (MQ=255)
                                           aCCGCAGGTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGa                                                                                                         >  4:74876/1‑147 (MQ=255)
                                           aCCGCAGGTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTATGATAAGGAGTAATCGTTTATCCGCAAATATCGTAAAAACCAGATTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGaaa                                                                                                       <  4:320236/149‑1 (MQ=255)
                                             cGCAGGTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATgg                                                                                                                       <  8:37834/131‑1 (MQ=255)
                                             cGCAGGTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATgg                                                                                                                       >  7:37834/1‑131 (MQ=255)
                                             cGCAGGTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAaga                                                                                                     <  3:74876/149‑1 (MQ=255)
                                                  gTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATggg                                                                                                                      <  8:249230/127‑1 (MQ=255)
                                                  gTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATggg                                                                                                                      >  7:249230/1‑127 (MQ=255)
                                                  gTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCAtt                                                                                                <  1:250435/149‑1 (MQ=255)
                                                      cTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTc                                                                                            <  4:340844/149‑1 (MQ=255)
                                                         cAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCa                                                                                           <  2:121699/147‑1 (MQ=255)
                                                         cAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCa                                                                                           <  2:160040/147‑1 (MQ=255)
                                                         cAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCa                                                                                           <  6:223267/147‑1 (MQ=255)
                                                            aagaCGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTAt                                                                                                                         >  8:287605/1‑114 (MQ=255)
                                                            aagaCGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTAt                                                                                                                         <  7:287605/114‑1 (MQ=255)
                                                            aagaCGCATCTGCCAGCCTGGCAGAACTGCTGAAAGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCAGCAAATAACGTAAAAACCCGCATCGGCGGGTGATTTTATGGGGGGAGTTTAGGGAAAGACCATATGTAAGAata                                                                                      >  8:255049/1‑149 (MQ=255)
                                                                 gCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTaa                                                                                 <  6:9116/149‑1 (MQ=255)
                                                                  cATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTTAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAg                                                                                <  7:102665/149‑1 (MQ=255)
                                                                  cATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAg                                                                                <  7:285124/149‑1 (MQ=255)
                                                                   ttCTGCCAGGCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTaa                                                                                 >  7:361106/2‑147 (MQ=255)
                                                                   ttCTGCCAGGCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTaa                                                                                 <  8:361106/146‑1 (MQ=255)
                                                                      tGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGGTTAGGGAAAGCGCATTTGTCAGAATATTTAAGGAAt                                                                            >  5:20730/1‑149 (MQ=255)
                                                                         tacattgattatgagtattcagaaattccttaaatattctgacaaatgctctttccctaaactccccccataaAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAg                                                                                <  3:49304‑M1/69‑1 (MQ=255)
                                                                         tacattgattatgagtattcagaaattccttaaatattctgacaaatgctctttccctaaactccccccataaAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAg                                                                                >  4:49304‑M1/74‑142 (MQ=255)
                                                                         cAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAAccc                                                                                                                                             >  3:253781/1‑81 (MQ=255)
                                                                         cAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAAccc                                                                                                                                             <  4:253781/81‑1 (MQ=255)
                                                                             cTGGCAGAACTGCTGAACGCAGGTCTTGGCGGTTCTGATTACGAGTAATCGTTAATCCGCAAATAACCTATAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGaa                                                                     <  7:255049/149‑1 (MQ=255)
                                                                                gCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATAc                                                                  >  6:288541/1‑149 (MQ=255)
                                                                                   gAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACGCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCa                                                               <  7:260056/149‑1 (MQ=255)
                                                                                         ctgAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATc                                                          >  6:218888/1‑148 (MQ=255)
                                                                                          tgAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCaa                                                        >  3:112232/1‑149 (MQ=255)
                                                                                           ctagaaattccttaaatattctgacaaatgctctttccctaaactccccccataaAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAAt                                                       >  3:102490‑M1/56‑149 (MQ=255)
                                                                                            atcGCAGGTCTGGTCGGTTCTGATATCGAGTAATCGTTAATCCGGATATAACGTAAAAACACGCTTATTCGGGTTTTTTTATTGTGGGTGTTTATGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGTATACTCATAATCAATg                                                      <  3:168128/147‑1 (MQ=255)
                                                                                            aaCGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAAt                                                       <  4:226807/148‑1 (MQ=255)
                                                                                            aaCGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATg                                                      <  1:107642/149‑1 (MQ=255)
                                                                                              gaaattccttaaatattctgacaaatgctctttccctaaactccccccataaAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAAt                                                       <  4:102490‑M1/94‑1 (MQ=255)
                                                                                              cGCAGGTCTTGGCGGGTCTGATAACGAGTCATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTa                                                    <  6:20730/149‑1 (MQ=255)
                                                                                              cGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTa                                                    <  4:112232/149‑1 (MQ=255)
                                                                                               gCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTa                                                    <  6:100931/148‑1 (MQ=255)
                                                                                                 aGGTCTGGGCGTTTCTGATAACGAGTAATCGTTAAACCGCAAATAACGTAAAAACCCGCTTCGTCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTa                                                    >  1:25513/1‑146 (MQ=255)
                                                                                                        ggCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACt                                           >  8:40585/1‑148 (MQ=255)
                                                                                                        ggCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACt                                           >  2:284751/1‑148 (MQ=255)
                                                                                                         gCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACTaa                                         <  8:110612/149‑1 (MQ=255)
                                                                                                          cGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCAGCTTCGGCGGGTTTTTTTATGGGGGGAGTGTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACTAat                                        <  4:249559/149‑1 (MQ=255)
                                                                                                            gTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACTAatat                                      >  5:48955/1‑149 (MQ=255)
                                                                                                             ttCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTTTGGGGGGAGTTTAGGGAAAGAGCAttt                                                                                               <  1:297384/91‑1 (MQ=255)
                                                                                                             ttCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCAttt                                                                                               >  2:297384/1‑91 (MQ=255)
                                                                                                             ttCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAAttt                                                                          <  8:380923/112‑1 (MQ=255)
                                                                                                             ttCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAAttt                                                                          >  7:380923/1‑112 (MQ=255)
                                                                                                                tGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACTAATATCCt                                   >  5:40617/1‑148 (MQ=255)
                                                                                                                tGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACTAATATCCt                                   >  1:39309/1‑148 (MQ=255)
                                                                                                                 gATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACTAATATCCTg                                  >  2:270768/1‑148 (MQ=255)
                                                                                                                 gATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCAGCTTCGGCGGGTTTTTTTATGGGGGGTGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATATACAATGTAGAGATGACTAATATCATg                                  >  2:283025/1‑148 (MQ=255)
                                                                                                                   tAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACTAATATCCTGaaa                               >  1:145396/1‑149 (MQ=255)
                                                                                                                    aaCGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTg                                                                                              <  3:147283/85‑1 (MQ=255)
                                                                                                                    aaCGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTg                                                                                              >  4:147283/1‑85 (MQ=255)
                                                                                                                      cGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACTAATATCCTGAAact                             >  3:276744/1‑148 (MQ=255)
                                                                                                                        aGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACTAATATCCTGAAactgac                          <  6:40617/149‑1 (MQ=255)
                                                                                                                        aGTAATCGTTAATCAGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACTAATATCCTGAAactgac                          >  7:266070/1‑149 (MQ=255)
                                                                                                                         gTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGa                                                                              >  8:303569/1‑96 (MQ=255)
                                                                                                                         gTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGa                                                                              <  7:303569/96‑1 (MQ=255)
                                                                                                                         gTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATAc                                                                  >  2:280993/1‑108 (MQ=255)
                                                                                                                         gTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATAc                                                                  <  1:280993/108‑1 (MQ=255)
                                                                                                                           aaTCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGa                                                                      >  1:191178/1‑102 (MQ=255)
                                                                                                                           aaTCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGa                                                                      <  2:191178/102‑1 (MQ=255)
                                                                                                                            aTCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACt                                                                 >  2:333671/1‑106 (MQ=255)
                                                                                                                            aTCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACt                                                                 <  1:333671/106‑1 (MQ=255)
                                                                                                                            aTCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACTAATATCCTGAAACTGACTGaa                      >  4:20259/1‑149 (MQ=255)
                                                                                                                             tCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACTAATATCCTGAAACTGACTGAAc                     <  6:48955/149‑1 (MQ=255)
                                                                                                                             tCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACTAATATCCTGAAACTGACTGAAc                     >  1:158916/1‑149 (MQ=255)
                                                                                                                               gTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACTAATATCCTGAAACTGACTGAACt                    >  3:266196/1‑148 (MQ=255)
                                                                                                                                    tCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACTAATATCCTGAAACTGACTGAACTAAtt                >  6:309460/1‑147 (MQ=255)
                                                                                                                                       gCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGAc                                            <  2:294507/116‑1 (MQ=255)
                                                                                                                                       gCAAATAACGTAAAAACCCGCTGCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGAc                                            >  1:294507/1‑116 (MQ=255)
                                                                                                                                            tAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACTAATATCCTGAAACTGACTGAACTAATTGAGTCAAACt      >  5:277745/1‑149 (MQ=255)
                                                                                                                                            tAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATATAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACTAATATCCTGAAACTGACTGAACTAATTGAGTCAAACt      >  3:85962/1‑149 (MQ=255)
                                                                                                                                                gTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGt                                                                                             >  8:336656/1‑58 (MQ=255)
                                                                                                                                                gTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACTAATATCCTGAAACTGACTGAACTAATTGAGTCAAACTCGGc  <  3:20259/149‑1 (MQ=255)
                                                                                                                                                 tAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGTGATGACTAATATCCTGAAACTGACTGAACTAATTGAGTCAAACTCGGc  >  5:304164/1‑148 (MQ=255)
                                                                                                                                                  AAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACTAATATCCTGAAACTGACTGAACTAATTGAGTCAAACTCGGc  <  5:193976‑M1/147‑1 (MQ=255)
                                                                                                                                                  AAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACTAATATCCTGAAACTGACTGAACTAATTGAGTCAAACTCGGc  <  2:27176‑M1/147‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                  
AGGATCGTATGCGTCGCCGTGCTGCGGGTGAAGCTCCGGCTGCACCGCAGGTGACTGCAGAAGACGCATCTGCCAGCCTGGCAGAACTGCTGAACGCAGGTCTGGGCGGTTCTGATAACGAGTAATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGGTTTTTTTATGGGGGGAGTTTAGGGAAAGAGCATTTGTCAGAATATTTAAGGAATTTCTGAATACTCATAATCAATGTAGAGATGACTAATATCCTGAAACTGACTGAACTAATTGAGTCAAACTCGGC  >  NC_000913/4189449‑4189741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.