Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 3,076,719 | G→A | 6.3% | V246V (GTC→GTT) | yggP ← | putative Zn‑binding dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,076,719 | 0 | G | A | 6.3% | 199.0 / 2.5 | 63 | V246V (GTC→GTT) | yggP | putative Zn‑binding dehydrogenase |
Reads supporting (aligned to +/- strand): ref base G (29/30); new base A (2/2); total (31/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.76e-01 |
GAAGTTTTTATCCGTCGGCCCGGCAAAGAAGTTCAGACAGCCATCTTCCGCCAGTAATTCATCAGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTGCGCCAGACGTTTGTCGTCGATATCGACCACCACCACCCGCGACGGTTGTAT > NC_000913/3076572‑3076859 | gAAGTTTTTATCCGTCGGCCCGGCAAAGAAGTTCAGACAGCCATCTTCCGCCAGTAATTCATCAGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGa > 2:13459/1‑149 (MQ=255) ggCCCGGCAAAGAAGTTCAGACAGCCATCTTCCGCCAGTAATTCATCAGACATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCCAACCCGGCATCTCCTGTCAGCACCCGCAGCATCTCGACAGGAACGCTCATccc > 6:33861/1‑149 (MQ=255) cGGCATAGAAGTGCAGACAGCCATCTTCCGCCAGTAATTCATCAGCCATCTCAACGAGAGCAGGCACCGCCGCATAAACAAAAATGTCTTCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTg < 5:33861/149‑1 (MQ=255) cGGCAAAGAAGCTCAGACAGCCATCTTCCGCCAGAAATTCATCAGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTg < 5:311498/149‑1 (MQ=255) gCAAAGAAGTTCAGACAGCCATCTTCCGCCAGTAATTCATCAGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGt < 3:218349/149‑1 (MQ=255) aaaGAAGTTCAGACAGCCATCTTCCGCCAGTAATTCATCAGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGa > 4:214661/1‑130 (MQ=255) aaaGAAGTTCAGACAGCCATCTTCCGCCAGTAATTCATCAGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGa < 3:214661/130‑1 (MQ=255) agaagTTCAGACAGCCATCTTCCGCCAGTAATTCATCAGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTc < 1:13459/149‑1 (MQ=255) gTTCAGACAGCCATCTTCCGCCAGTAATTCATCAGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACAt < 1:213016/149‑1 (MQ=255) ttCAGACAGCCATCTTCCGCCAGTAATTCATCAGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGAACAGGATCGCTCATCCCTTTGGTATTCACATa > 1:203028/1‑149 (MQ=255) ttCAGACAGCCATCTTCCGCCAGTAATTCATCAGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGAACAGGATCGCTCATCCCTTTGGTATTCACATa > 1:197122/1‑149 (MQ=255) aCAGCCATCTTCCGCCAGTAATTCATCAGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTca < 6:93950/140‑1 (MQ=255) aCAGCCATCTTCCGCCAGTAATTCATCAGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTca > 5:93950/1‑140 (MQ=255) aCAGCCATCTTCCGCAAGTAATTCCTCAGCCATCTCAACGACAGCCGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTTTTCACATACACCa < 2:250091/149‑1 (MQ=255) aGCCATCTTCCGCCAGTAATTCATCAGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGc > 6:370990/1‑149 (MQ=255) ccGCCAGTAATTCATCAGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAAt < 8:330014/145‑1 (MQ=255) ccGCCAGTAATTCATCAGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAAt < 3:106397/145‑1 (MQ=255) cGCCAGTAATTCATCAGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCtt < 5:370990/149‑1 (MQ=255) gCCAGTAATTCATCAGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCtt > 6:170542/1‑148 (MQ=255) cAGTAATTCATCAGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTAc < 3:203256/149‑1 (MQ=255) ttCATCAGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGgccg > 8:362464/1‑149 (MQ=255) tcatcaGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGgccgc > 8:258703/1‑149 (MQ=255) aGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCa < 4:65892/146‑1 (MQ=255) aGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAAGGCCTTTACTGGCCGCCa > 3:65892/1‑146 (MQ=255) gCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTc > 8:104067/1‑149 (MQ=255) aTCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACCCCAGCTCACTGCCTTTACTGGCCGCCAGTTCCAc > 1:144492/1‑149 (MQ=255) aaCGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCgg > 7:201580/1‑147 (MQ=255) aaCGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCgg > 7:43770/1‑147 (MQ=255) aaCGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGgca > 4:305252/1‑149 (MQ=255) gACAGCAGGCACCGCCGCATAAACAAAAATGTCATCTAACCCGGCATCTCCTGTCAGCTCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGgcagca < 4:283170/149‑1 (MQ=255) agGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCt > 4:162462/1‑149 (MQ=255) ggCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTg < 3:162462/149‑1 (MQ=255) gCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGgc < 7:21273/121‑1 (MQ=255) gCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGgc > 8:21273/1‑121 (MQ=255) gCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTg > 6:224999/1‑148 (MQ=255) aCCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGAACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTAc < 2:203028/149‑1 (MQ=255) aCCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGAACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTAc < 2:197122/149‑1 (MQ=255) cgccgcATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGgcag < 2:269473/135‑1 (MQ=255) cgccgcATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGgcag > 1:269473/1‑135 (MQ=255) gccgcATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTg > 7:264712/1‑149 (MQ=255) aaCAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTg > 2:112437/1‑73 (MQ=255) aaCAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTg < 1:112437/73‑1 (MQ=255) aaTGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCa < 2:283245/83‑1 (MQ=255) aaTGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCa > 1:283245/1‑83 (MQ=255) tCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTGCGCCAGACGTTTgtcgt < 8:43770/148‑1 (MQ=255) aTCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTGCGCCAGACGTTTGtcgtcg < 5:224999/148‑1 (MQ=255) aTCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTGCGCCAGACGTTTGTCGTCGa > 7:51317/1‑149 (MQ=255) tCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTGCGCCAGAc < 2:368787/136‑1 (MQ=255) tCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTGCGCCAGAc > 1:368787/1‑136 (MQ=255) ccGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATAAACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTGCGCCAGACGTTTGTCGTCGATATCGac > 2:266297/1‑149 (MQ=255) ggCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGt > 8:131282/1‑115 (MQ=255) aTCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTGCGCCAGACGTTTGTCGTCGATATCGaccacca < 7:104067/149‑1 (MQ=255) aTCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTGCGCCAGACGTTTGTCGTCGATATCGaccacca < 8:201580/149‑1 (MQ=255) tcCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTGCGCCAGACGTTTGTCGTCGATATCGaccaccacca > 7:98128/1‑149 (MQ=255) gTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTGCGCCAGACGTTTGTCGTCGATATCGACCACCACCACCcg > 6:321711/1‑149 (MQ=255) tCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTGCGCCAGACGttt > 7:9827/1‑121 (MQ=255) tCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTGCGCCAGACGttt < 8:9827/121‑1 (MQ=255) tCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTGCGCCAGACGTTTGTCGTCGATATCGaccac < 1:302161/139‑1 (MQ=255) tCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTGCGCCAGACGTTTGTCGTCGATATCGaccac > 2:302161/1‑139 (MQ=255) ccGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATAAACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTGCGCCAGACGTTTGTCGTCGATATCGACCACCACCACCCGCGACGGtt < 1:266297/149‑1 (MQ=255) gcagcaTCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTGCGCCAGACGTTTGTCGTCGATATCGACCACCACCACCCGCGACGGTTGt < 7:258703/149‑1 (MQ=255) agcaTCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTGCGCCAGACGTTTGTCGTCGATATCGACCACCACCACCCGCGACGGTTGTAt < 5:321711/149‑1 (MQ=255) agcaTCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTGCGCCAGACGTTTGTCGTCGATATCGACCACCACCACCCGCGACGGTTGTAt < 3:305252/149‑1 (MQ=255) gACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTGCGCCAGACGTTTGTCGTCGATATCGaccacc > 7:308206/1‑121 (MQ=255) gACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTGCGCCAGACGTTTGTCGTCGATATCGaccacc < 8:308206/121‑1 (MQ=255) | GAAGTTTTTATCCGTCGGCCCGGCAAAGAAGTTCAGACAGCCATCTTCCGCCAGTAATTCATCAGCCATCTCAACGACAGCAGGCACCGCCGCATAAACAAAAATGTCATCGAACCCGGCATCTCCTGTCAGCGCCCGCAGCATCTGGACAGGATCGCTCATCCCTTTGGTATTCACATACACCAGCTCAATGCCTTTACTGGCCGCCAGTTCCACCGGCAGCAGCTTCTGTACCTGCGCCAGACGTTTGTCGTCGATATCGACCACCACCACCCGCGACGGTTGTAT > NC_000913/3076572‑3076859 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |