| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3241195 = | 40 (1.280) | 6 (0.210) | 6/228 | 2.8 | 13.9% | coding (550/552 nt) | ygjV | Imp‑YgjV family inner membrane protein |
| ? | NC_000913 | 3241224 = | 37 (1.270) | coding (521/552 nt) | ygjV | Imp‑YgjV family inner membrane protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCTTATGAATGGCCTGAATATCATTCGTTTCTGGCGGATGCAGAAAAGGGGAATTGATCCGTTTAAAGTTGAGAAAACCCCTTCCGCCGTAGACGAAAGGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3241298‑3241195‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggggttTTCTCAACTTTAAACGGATCAATTCCCCTTTTCTGCATCCGCCAGAAACGAATGATATTCAGGCCATTCATAAGCAGAAAACTACCCTCAATCATCGTGCCGCCTATCGACCCCGCCCAGAAGTTGTGAATCA > NC_000913/3241224‑3241356 GCTTATGAATGGCCTGAATATCATTCGTTTCTGGCGGATGCAGAAAAGGGGAATTGATCCGTTTAAAGTTGAGAAAACCCCTTCCGCCGTAGACGAAAG > 7:19186/1‑99GCTTATGAATGGCCTGAATATCATTCGTTTCTGGCGGATGCAGAAAAGGGGAATTGATCCGTTTAAAGTTGAGAAAACCCCTTCCGCCGTAGACGAAAG < 8:19186/99‑1 TGAGAAAACCCCTTCCGCCGTAGACGAAAGGGGTTTTCTCAACTTTAAACGGATCAATTCCCCTTTTCTGCATCCGCCAGAAACGAA > 5:7369/1‑87 TGAGAAAACCCCTTCCGCCGTAGACGAAAGGGGTTTTCTCAACTTTAAACGGATCAATTCCCCTTTTCTGCATCCGCCAGAAACGAA < 6:7369/87‑1 ACCCCTTCCGCCGTAGACGAAAGGGGTTTTCTCAACTTTAAACGGATCAATTCCCCTTTTCTGCATCCGCCAGAAACGAATGATATTCAGGCCATTCATAAGCAGAAAACTACCCTCAATCATCGTGCCGCCTATCGACCCCGCCCAG > 4:66325/1‑148 CTTCCGCCGTAGACGAAAGGGGTTTTCTCAACTTTAAACGGATCAATTCCCCTTTT > 5:57487/1‑56 CTTCCGCCGTAGACGAAAGGGGTTTTCTCAACTTTAAACGGATCAATTCCCCTTTT < 6:57487/56‑1 GTAGACGAAAGGGGTTTTCTCAACTTTAAACGGATCAATTCCCCTTTTCTGCATCCGCCAGAAACGAATGATATTCAGGCCATTCATAAGCAGAAAACTACCCTCAATCATCGTGCCGCCTATCGACCCCGCCCAGAAGTTGTGAATCA < 3:66325/149‑1 AGGGGTTTTCTCAACTTTAAACGGATCAATTCCCCTTTTCTGCATCCGCCAGAAACGAATGATATTCAGGCCATTCATAAGCAGAAAACTACCCTCAATCATCGTGCCGCCTATCGACCCCGCCCAGAAGTTGT > 3:129592/1‑134 AGGGGTTTTCTCAACTTTAAACGGATCAATTCCCCTTTTCTGCATCCGCCAGAAACGAATGATATTCAGGCCATTCATAAGCAGAAAACTACCCTCAATCATCGTGCCGCCTATCGACCCCGCCCAGAAGTTGT < 4:129592/134‑1 GCTTATGAATGGCCTGAATATCATTCGTTTCTGGCGGATGCAGAAAAGGGGAATTGATCCGTTTAAAGTTGAGAAAACCCCTTCCGCCGTAGACGAAAGGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3241298‑3241195‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggggttTTCTCAACTTTAAACGGATCAATTCCCCTTTTCTGCATCCGCCAGAAACGAATGATATTCAGGCCATTCATAAGCAGAAAACTACCCTCAATCATCGTGCCGCCTATCGACCCCGCCCAGAAGTTGTGAATCA > NC_000913/3241224‑3241356 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |