New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2850545 =	38 (1.220)	5 (0.170)	5/232	3.1	13.1%	intergenic (‑110/‑102)	hycA/hypA	regulator of the transcriptional regulator FhlA/protein involved in nickel insertion into hydrogenases 3
	?	NC_000913	2850575 =	30 (1.010)					intergenic (‑140/‑72)	hycA/hypA	regulator of the transcriptional regulator FhlA/protein involved in nickel insertion into hydrogenases 3
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAATCGGCTTTCTCGCTTATTTCCCAAATAGTCATTGTCAGGTTACCCGTTTAACAGAGATGCCAGCTTTAAGCATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAATCAACACTGGCACAATTATTGCTTGTAGCTGGCAATAGTTAATGGGAGGCGATATGCACGAAATAACCCTCTGCCAACGGGCACTG  >  NC_000913/2850401‑2850679                                                                                                                                                 |                                                                                                                                       tAATCGGCTTTCTCGCTTATTTCCCAAATAGTCATTGTCAGGTTACCCGTTTAACAGAGATGCCAGCTTTAAGCATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTc                                                                                                                                     >  2:168475/1‑148 (MQ=255)               gCTTATTTCCCAAATAGTCATTGTCAGGTTACCCGTTTAACAGAGATGCCAGCTTTAAGCATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCg                                                                                                                       <  6:110769/148‑1 (MQ=255)               gCTTATTTCCCAAATAGTCATTGTCAGGTTACCCGTTTAACAGAGATGCCAGCTTTAAGCATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGa                                                                                                                      >  8:112944/1‑149 (MQ=255)                   aTTTCCCAAATAGTCATTGTCAGGTTACCCGTTTAACAGAGATGCCAGCTTTAAGCATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGAcat                                                                                                                   >  4:100206/1‑148 (MQ=255)                       cccAAATAGTCATTGTCAGGTTACCCGTTTAACAGAGATGCCAGCTTTAAGCATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACgt                                                                                                                                <  8:132716/131‑1 (MQ=255)                                  aTTGTCAGGTTACCCGTTTAACAGAGATGCCAGCTTTAAGCATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGa                                                                                                                      <  6:23048/130‑1 (MQ=255)                                  aTTGTCAGGTTACCCGTTTAACAGAGATGCCAGCTTTAAGCATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGa                                                                                                                      >  5:23048/1‑130 (MQ=255)                                     gTCAGGTTACCCGTTTAACAGAGATGCCAGCTTTAAGCATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACgtg                                                                                                                               >  8:60919/1‑118 (MQ=255)                                     gTCAGGTTACCCGTTTAACAGAGATGCCAGCTTTAAGCATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACgtg                                                                                                                               <  7:60919/118‑1 (MQ=255)                                              cccGTTTAACAGAGATGCCAGCTTTAAGCATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGa                                                                                           <  3:75702/145‑1 (MQ=255)                                              cccGTTTAACAGAGATGCCAGCTTTAAGCATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGa                                                                                           >  4:75702/1‑145 (MQ=255)                                              cccGTTTAACAGAGATGCCAGCTTTAAGCATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAAt                                                                                       <  3:100206/149‑1 (MQ=255)                                                  tttAACAGAGATGCCAGCTTTAAGCATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGACGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAATCAac                                                                                   >  6:62515/1‑149 (MQ=255)                                                    tAACAGAGATGCCAGCTTTAAGCATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAATCAaca                                                                                  <  7:112944/148‑1 (MQ=255)                                                       cAGAGATGCCAGCTTTAAGCATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACatcatc                                                                                                               <  1:5871/116‑1 (MQ=255)                                                       cAGAGATGCCAGCTTTAAGCATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACatcatc                                                                                                               >  2:5871/1‑116 (MQ=255)                                                        agagATGCCAGCTTTAAGCATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACattatt                                                                                                      <  8:46651/124‑1 (MQ=255)                                                        agagATGCCAGCTTTAAGCATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACattatt                                                                                                      >  7:46651/1‑124 (MQ=255)                                                             tGCCAGCTTTAAGCATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGACGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAATCAACGCTGGCACAat                                                                        <  5:62515/149‑1 (MQ=255)                                                               ccAGCTTTAAGCATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAATCAACACTGGCACAatta                                                                      <  7:15943/149‑1 (MQ=255)                                                                          cATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGAc                                                                                                                     >  5:23806/1‑91 (MQ=255)                                                                          cATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGAc                                                                                                                     <  6:23806/91‑1 (MQ=255)                                                                                    gCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAATCAACACTGGCACAATTATTGCTTGTAGCTGGCAATAGt                                                 >  6:147833/1‑149 (MQ=255)                                                                                     ccAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAATCAACACTGGCACAATTATTGc                                                                  >  4:120431/1‑131 (MQ=255)                                                                                     ccAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAATCAACACTGGCACAATTATTGc                                                                  <  3:120431/131‑1 (MQ=255)                                                                                     ccAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAATCAACACTGGCACAATTATTGCTTGTAGCTGGCAATAGt                                                 >  1:167384/1‑148 (MQ=255)                                                                                                      gTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAATCAACACTGGCACAATTATTGc                                                                  <  2:147795/114‑1 (MQ=255)                                                                                                                           cTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAATCAACACTGGCACAATTATTGCTTGTAGCTGGCAATAGTTaa                                              <  3:17718/113‑1 (MQ=255)                                                                                                                           cTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAATCAACACTGGCACAATTATTGCTTGTAGCTGGCAATAGTTaa                                              >  4:17718/1‑113 (MQ=255)                                                                                                                             aaaGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAATCAACACTGGCACAATTATTGCTTGTAGCTGGCAATAGTTAATGGGAGGCGata                                  <  6:26996/123‑1 (MQ=255)                                                                                                                             aaaGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAATCAACACTGGCACAATTATTGCTTGTAGCTGGCAATAGTTAATGGGAGGCGata                                  >  5:26996/1‑123 (MQ=255)                                                                                                                                 aTGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAATCAACACTGGCACAattatt                                                                    >  2:66527/1‑85 (MQ=255)                                                                                                                                 aTGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAATCAACACTGGCACAattatt                                                                    <  1:66527/85‑1 (MQ=255)                                                                                                                                    aaTTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAATCAACACTGGCACAATTATTGCTTGTAGCTGGCAATAGTTAATGGGAGGCGATATGCACGAAATAACCCTCTGCCAACGGGCACTg  <  5:147833/148‑1 (MQ=255)                                                                                                                                           tcgCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAATCAacac                                                                                 >  3:47709/1‑62 (MQ=255)                                                                                                                                           tcgCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAATCAacac                                                                                 <  4:47709/62‑1 (MQ=255)                                                                                                                                             gCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAATCAACACTGGCACAATTATTGCTTGTAGCTGGCAATAGTTaa                                              >  3:22318/1‑95 (MQ=255)                                                                                                                                             gCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAATCAACACTGGCACAATTATTGCTTGTAGCTGGCAATAGTTaa                                              <  4:22318/95‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                       TAATCGGCTTTCTCGCTTATTTCCCAAATAGTCATTGTCAGGTTACCCGTTTAACAGAGATGCCAGCTTTAAGCATTTTTTGTGCCAACTTTTAATTTATTGTTATTAAAGAGATTTTTAAGCTAAAGATGAATTTCGTCGCCGTGTCGACGTGTCATTTCGACATCATCGACATTATTCACCGCAGGGATAATCAACACTGGCACAATTATTGCTTGTAGCTGGCAATAGTTAATGGGAGGCGATATGCACGAAATAACCCTCTGCCAACGGGCACTG  >  NC_000913/2850401‑2850679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.