| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2871564 = | 23 (0.740) | 5 (0.170) | 5/228 | 3.1 | 16.5% | coding (217/480 nt) | ispF | 2C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase |
| ? | NC_000913 | 2871614 = | 29 (0.990) | coding (167/480 nt) | ispF | 2C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGCGGCAACATCTTCGGTGCCTGAGCGATGATAGTGACATCGACGTTGCCAAGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGCGCCACGTCGCCATCAGAATGCGCCAGCAATCCTTTTTCGTAAGGAATG > NC_000913/2871458‑2871709 | tgCGGCAACATCTTCGGTGCCTGAGCGATGATAGTGACATCGACGTTGCCAAGGGTATAACCCTACGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCt < 1:86040/148‑1 (MQ=255) ggCAACATCTTCGGTGCCTGAGCGATGATAGTGACATCGACGTTGCCAAGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGcc > 6:34611/1‑149 (MQ=255) tAGTGACATCGACGTTGCCAAGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGc < 6:92502/149‑1 (MQ=255) tGACATCGACGTTGCCAAGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGata < 3:91763/122‑1 (MQ=255) tGACATCGACGTTGCCAAGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGata > 4:91763/1‑122 (MQ=255) aTCGACGTTGCCAAGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTaaa < 6:77486/84‑1 (MQ=255) aTCGACGTTGCCAAGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTaaa > 5:77486/1‑84 (MQ=255) aTCGACGTTGCCAAGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGAACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCAt > 8:40803/1‑149 (MQ=255) tCGACGTTGCCAAGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATc > 2:173278/1‑92 (MQ=255) tCGACGTTGCCAAGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATc > 8:135732/1‑149 (MQ=255) aaGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCAt > 3:98976/1‑149 (MQ=255) aaCCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAgcgc > 1:133850/1‑148 (MQ=255) cTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCaa > 7:105566/1‑114 (MQ=255) cTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCaa < 8:105566/114‑1 (MQ=255) gAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGCGCCACGTCGCCATCa < 4:98976/149‑1 (MQ=255) aaTACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGat < 8:90280/84‑1 (MQ=255) aaTACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGat > 7:90280/1‑84 (MQ=255) ccAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGCGCCACGTCGCCATCAGAATGCGCCa < 7:135732/149‑1 (MQ=255) gCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGCGCCACGTCGCCATCAGAATGCGCCAGCaa < 5:34611/149‑1 (MQ=255) ttCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGCGCCa > 2:61553/1‑122 (MQ=255) gcagcTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGCGCCACGTCGCCATCAGAATGCGCCAGCAATCCTTTTTc < 2:133850/148‑1 (MQ=255) cgGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCTCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGCGCCACGTCGCCATCAGAATGCGCCAGCAATCCTTTTTCGTAAGGAAt < 7:40803/149‑1 (MQ=255) ggCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGCGCCACGTCGCCATCAGAATGCGCCAGCAATCCTTTTTCGTAAGGAATg > 1:1902/1‑149 (MQ=255) tATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGCGCCACGTCGCCATCAGAATGCGCCAGCAATCCTTTTTCGTAAGGAAt > 6:90339/1‑145 (MQ=255) tATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGCGCCACGTCGCCATCAGAATGCGCCAGCAATCCTTTTTCGTAAGGAAt < 5:90339/145‑1 (MQ=255) | TGCGGCAACATCTTCGGTGCCTGAGCGATGATAGTGACATCGACGTTGCCAAGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGCGCCACGTCGCCATCAGAATGCGCCAGCAATCCTTTTTCGTAAGGAATG > NC_000913/2871458‑2871709 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |