mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 28.3% | 77.7 / 35.8 | 53 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 18 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 55 (0.680) | 10 (0.140) | 9/254 | 4.5 | 17.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 47 (0.650) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 67 (0.830) | 6 (0.080) | 6/254 | 5.4 | 10.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 48 (0.670) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1722616 = | 76 (0.940) | 5 (0.070) | 5/264 | 5.9 | 6.7% | coding (496/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump |
| ? | NC_000913 | = 1722612 | 70 (0.940) | coding (492/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump | |||||
| * | ? | NC_000913 | = 114505 | 83 (1.020) | 4 (0.050) | 4/262 | 6.3 | 4.9% | intergenic (+18/+17) | guaC/hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein |
| ? | NC_000913 | = 114511 | 80 (1.080) | intergenic (+24/+11) | guaC/hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein | |||||
| * | ? | NC_000913 | = 2261714 | 95 (1.170) | 4 (0.050) | 4/270 | 6.4 | 4.3% | coding (652/939 nt) | fruK | fructose‑1‑phosphate kinase |
| ? | NC_000913 | = 2261731 | 89 (1.160) | coding (635/939 nt) | fruK | fructose‑1‑phosphate kinase | |||||
| * | ? | NC_000913 | = 715221 | 89 (1.100) | 4 (0.050) | 4/264 | 6.4 | 4.5% | intergenic (+23/‑191) | pgm/ybfP | phosphoglucomutase/lipoprotein |
| ? | NC_000913 | = 715231 | 86 (1.150) | intergenic (+33/‑181) | pgm/ybfP | phosphoglucomutase/lipoprotein | |||||
| * | ? | NC_000913 | 3704016 = | 116 (1.430) | 4 (0.050) | 4/280 | 6.6 | 3.2% | coding (746/903 nt) | dppC | dipeptide/heme ABC transporter permease |
| ? | NC_000913 | 3704042 = | 128 (1.610) | coding (720/903 nt) | dppC | dipeptide/heme ABC transporter permease | |||||
| * | ? | NC_000913 | = 2817942 | 63 (0.780) | 3 (0.040) | 3/246 | 6.6 | 3.8% | intergenic (‑82/+117) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
| ? | NC_000913 | 2818492 = | 96 (1.380) | noncoding (58/77 nt) | argV | tRNA‑Arg | |||||
| * | ? | NC_000913 | 580753 = | 72 (0.890) | 3 (0.040) | 3/254 | 6.7 | 4.4% | intergenic (‑308/‑81) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| ? | NC_000913 | 580810 = | 68 (0.950) | intergenic (‑365/‑24) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein | |||||
| * | ? | NC_000913 | 3852834 = | 104 (1.280) | 5 (0.070) | 3/264 | 6.8 | 5.0% | intergenic (‑50/+56) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide |
| ? | NC_000913 | 3852867 = | 94 (1.260) | intergenic (‑83/+23) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide | |||||