breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0600CT28.3% 77.7 / 35.8 53intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Marginal new junction evidence (lowest skew 10 of 18 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 120780555 (0.680)10 (0.140) 9/254 4.5 17.3% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 47 (0.650)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 1207790 =67 (0.830)6 (0.080) 6/254 5.4 10.1% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 48 (0.670)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 1722616 =76 (0.940)5 (0.070) 5/264 5.9 6.7% coding (496/2013 nt) ydhK putative efflux protein (PET) component of YdhJK efflux pump
?NC_000913 = 1722612 70 (0.940)coding (492/2013 nt) ydhK putative efflux protein (PET) component of YdhJK efflux pump
* ? NC_000913 = 11450583 (1.020)4 (0.050) 4/262 6.3 4.9% intergenic (+18/+17) guaC/hofC GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein
?NC_000913 = 114511 80 (1.080)intergenic (+24/+11) guaC/hofC GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein
* ? NC_000913 = 226171495 (1.170)4 (0.050) 4/270 6.4 4.3% coding (652/939 nt) fruK fructose‑1‑phosphate kinase
?NC_000913 = 2261731 89 (1.160)coding (635/939 nt) fruK fructose‑1‑phosphate kinase
* ? NC_000913 = 71522189 (1.100)4 (0.050) 4/264 6.4 4.5% intergenic (+23/‑191) pgm/ybfP phosphoglucomutase/lipoprotein
?NC_000913 = 715231 86 (1.150)intergenic (+33/‑181) pgm/ybfP phosphoglucomutase/lipoprotein
* ? NC_000913 3704016 =116 (1.430)4 (0.050) 4/280 6.6 3.2% coding (746/903 nt) dppC dipeptide/heme ABC transporter permease
?NC_000913 3704042 = 128 (1.610)coding (720/903 nt) dppC dipeptide/heme ABC transporter permease
* ? NC_000913 = 281794263 (0.780)3 (0.040) 3/246 6.6 3.8% intergenic (‑82/+117) argQ/argZ tRNA‑Arg/tRNA‑Arg
?NC_000913 2818492 = 96 (1.380)noncoding (58/77 nt) argV tRNA‑Arg
* ? NC_000913 580753 =72 (0.890)3 (0.040) 3/254 6.7 4.4% intergenic (‑308/‑81) ylcI/nohD DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein
?NC_000913 580810 = 68 (0.950)intergenic (‑365/‑24) ylcI/nohD DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein
* ? NC_000913 3852834 =104 (1.280)5 (0.070) 3/264 6.8 5.0% intergenic (‑50/+56) ilvB/ivbL acetolactate synthase 2 large subunit/ilvB operon leader peptide
?NC_000913 3852867 = 94 (1.260)intergenic (‑83/+23) ilvB/ivbL acetolactate synthase 2 large subunit/ilvB operon leader peptide