| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,783,560 | IS2 (+) +5 bp | intergenic (‑256/+74) | pinH ← / ← ypjC | pseudogene, invertase resolvase family/pseudogene |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2783560 = | 1 (0.030) | 30 (0.920) | 29/246 | 0.3 | 96.6% | intergenic (‑256/+78) | pinH/ypjC | pseudogene, invertase resolvase family/pseudogene |
| ? | NC_000913 | = 3187426 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 2783564 | 1 (0.030) | 29 (0.890) | 27/246 | 0.3 | 96.5% | intergenic (‑260/+74) | pinH/ypjC | pseudogene, invertase resolvase family/pseudogene |
| ? | NC_000913 | = 2997691 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
AGACATTAGATGAAATATTTCAACCAATTACAGCACCAATTCAGTCACTGCCAGCCCACCAAATAAATCAAGGGGTTACATGAAAACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACAACGGGACTAGTCACAACAGGAC > NC_000913/2783421‑2783690 | ttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAATCCCGtt < 1:10140‑M1/9‑1 (MQ=255) aCATTAGATGAAATATTTCAACCAATTACAGCACCAATTCAGTCACTGCCAGCCCACCAAATAAATCAAGGGGTTACATGAAAACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTAc < 4:110091/149‑1 (MQ=255) ttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAATCCCGTTTACTcaatcaat > 2:10140‑M1/129‑149 (MQ=255) gagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAATCCCGTTTACTCAATCaataa > 2:160250‑M1/126‑148 (MQ=255) ttCAACCAATTACAGCACCAATTCAGTCACTGCCAGCCCACCAAATAAATCAAGGGGTTACATGAAAACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccctgaatctc < 5:8335‑M1/147‑22 (MQ=255) ttCAACCAATTACAGCACCAATTCAGTCACTGCCAGCCCACCAAATAAATCAAGGGGTTACATGAAAACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccctgaatctc > 6:8335‑M1/1‑126 (MQ=255) tCAACCAATTACAGCACCAATTCAGTCACTGCCAGCCCACCAAATAAATCAAGGGGTTACATGAAAACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccctgaatctcca < 1:1837‑M1/148‑24 (MQ=255) aaCCAATTACAGCACCAATTCAGTCACTGCCAGCCCACCAAATAAATCAAGGGGTTACATGAAAACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccctgaatctccaga > 1:36567‑M1/1‑123 (MQ=255) cgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAATCCCGTTTACTCAATCAATAATACATATTGttt > 6:74899‑M1/115‑149 (MQ=255) aaTTACAGCACCAATTCAGTCACTGCCAGCCCACCAAATAAATCAAGGGGTTACATGAAAACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccctgaatctccagacaacc < 2:153662‑M1/149‑31 (MQ=255) gCACCAATTCAGTCACTGCCAGCCCACCAAATAAATCAAGGGGTTACATGAAAACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccctgaatctccagacaaccaatatca < 8:33378‑M1/149‑38 (MQ=255) catccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTa < 2:174653‑M1/42‑1 (MQ=255) aGTCACTGCCAGCCCACCAAATAAATCAAGGGGTTACATGAAAACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCta > 5:90334‑M1/1‑102 (MQ=255) aGTCACTGCCAGCCCACCAAATAAATCAAGGGGTTACATGAAAACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCta < 6:90334‑M1/104‑3 (MQ=255) gctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAATCCCGtt < 1:92978‑M1/9‑1 (MQ=255) gctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAATCCCGtt > 2:92978‑M1/94‑102 (MQ=255) gCCAGCCCACCAAATAAATCAAGGGGTTACATGAAAACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccctgaatctt > 8:52324‑M1/1‑95 (MQ=255) gCCCACCAAATAAATCAAGGGGTTACATGAAAACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccct > 4:144976‑M1/1‑91 (MQ=255) gCCCACCAAATAAATCAAGGGGTTACATGAAAACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccct < 3:144976‑M1/105‑15 (MQ=255) acgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATtta < 2:63949‑M1/74‑1 (MQ=255) tCAAGGGGTTACATGAAAACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttt > 6:26743‑M1/1‑77 (MQ=255) tatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCa < 6:95991‑M1/81‑1 (MQ=255) tctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCAtt < 8:93734‑M1/83‑1 (MQ=255) gTTACATGAAAACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtc < 5:26743‑M1/149‑80 (MQ=255) cggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGaa > 5:95991‑M1/63‑148 (MQ=255) tGAAAACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccctgaatctccagacaaccaatatcacttaaataagt < 7:66617‑M1/112‑49 (MQ=255) tGAAAACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccctgaatctccagacaaccaatatcacttaaataagt > 8:66617‑M1/1‑64 (MQ=255) aaCGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaa > 4:35492‑M1/1‑60 (MQ=255) gtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCAttt < 6:109752‑M1/73‑1 (MQ=255) gtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTCAAAACTGCTTTTAg > 3:66303‑M1/50‑147 (MQ=255) taatgggttaagtgataacagatgtctggaaatataggggcaaatccaAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGc < 2:145542‑M1/68‑1 (MQ=255) taatgggttaagtgataacagatgtctggaaatataggggcaaatccaAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGc > 1:145542‑M1/49‑116 (MQ=255) ccTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgatt > 3:65327‑M1/1‑51 (MQ=255) ccTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgatt > 7:69413‑M1/1‑51 (MQ=255) atgggttaagtgataacagatgtctggaaatataggggcaaatccaAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACt > 7:93734‑M1/47‑148 (MQ=255) cTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattgga > 6:127165‑M1/1‑50 (MQ=255) cTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattgga < 5:127165‑M1/135‑86 (MQ=255) tttCTTTGGTAGTGACACTAAAATGGATGTAGTTTGAAGAATAATCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgat < 3:14113‑M1/147‑101 (MQ=255) tGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtctt < 4:65327‑M1/146‑106 (MQ=255) ataacagatgtctggaaatataggggcaaatccaAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACAACGGGa > 1:174653‑M1/35‑149 (MQ=255) aacagatgtctggaaatataggggcaaatccaAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTa > 5:43244‑M1/33‑129 (MQ=255) aacagatgtctggaaatataggggcaaatccaAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTa < 6:43244‑M1/97‑1 (MQ=255) aacagatgtctggaaatataggggcaaatccaAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACAACGGGAc < 3:46576‑M1/116‑1 (MQ=255) tGACACTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacaga < 2:56075‑M1/127‑93 (MQ=255) tGACACTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacaga > 1:56075‑M1/1‑35 (MQ=255) acTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaa > 8:24257‑M1/1‑31 (MQ=255) acTAAAATGGATGTAGTGTGAAGAATAATCCtagactggccccctgaatctccagacaaccaaaatcacttaaataagtcatagtcataatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaa > 5:76611‑M1/1‑31 (MQ=255) aaaTGGATGTAGTGTGAAGAATAATCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgc < 8:69413‑M1/148‑122 (MQ=255) gaaatataggggcaaatccaAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACAACGGGACTAGTCACAACAg > 4:46576‑M1/21‑148 (MQ=255) aaatataggggcaaatccaAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCa > 4:122225‑M1/20‑100 (MQ=255) aaatataggggcaaatccaAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCa < 3:122225‑M1/81‑1 (MQ=255) atataggggcaaatccaAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACAACGGGACTAGTCACAACAGGAc < 8:4210‑M1/131‑1 (MQ=255) gggcaaatccaAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCAttt < 2:32707‑M1/73‑1 (MQ=255) gggcaaatccaAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCAttt > 1:32707‑M1/12‑84 (MQ=255) tgAAGAATAATCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacag > 6:132007‑M1/1‑13 (MQ=255) tgAAGAATAATCCtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacag < 5:132007‑M1/104‑92 (MQ=255) aatccaAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACAACGGGACTAGt > 2:125140‑M1/7‑126 (MQ=255) aatccaAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACAACGGGACTAGt < 1:125140‑M1/120‑1 (MQ=255) aAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACaa > 1:184020‑M1/2‑111 (MQ=255) aAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACaa < 2:184020‑M1/110‑1 (MQ=255) | AGACATTAGATGAAATATTTCAACCAATTACAGCACCAATTCAGTCACTGCCAGCCCACCAAATAAATCAAGGGGTTACATGAAAACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACAACGGGACTAGTCACAACAGGAC > NC_000913/2783421‑2783690 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |