New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3767466	21 (0.650)	4 (0.130)	4/234	3.6	15.4%	pseudogene (246/945 nt)	rhsJ	Rhs‑family protein
	?	NC_000913	= 3767490	24 (0.780)					pseudogene (270/945 nt)	rhsJ	Rhs‑family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGA  >  NC_000913/3767344‑3767611                                                                                                                           |                                                                                                                                                  tACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGACCCCGCATCATCTg                                                                                                                           >  7:62175/1‑147 (MQ=37)                    tCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGca                                                                                                                                  <  2:75855/121‑1 (MQ=35)                    tCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGca                                                                                                                                  >  1:75855/1‑121 (MQ=35)                                      aCCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATgag                                                                                    <  8:62175/149‑1 (MQ=255)                                        cATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGc                                                                                                                                   >  8:126877/1‑100 (MQ=37)                                        cATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGc                                                                                                                                   <  7:126877/100‑1 (MQ=37)                                                  tGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTcagca                                                                                              <  8:85868/127‑1 (MQ=255)                                                  tGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTcagca                                                                                              >  7:85868/1‑127 (MQ=255)                                                  tGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTcagca                                                                                              <  6:161413/127‑1 (MQ=255)                                                  tGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTcagca                                                                                              >  5:161413/1‑127 (MQ=255)                                                    ccGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTa                                                                      >  8:65045/1‑149 (MQ=255)                                                            gcTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAAcc                                                              <  7:65045/149‑1 (MQ=255)                                                                                         ggtgCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTgggg                                 >  8:17525/1‑149 (MQ=255)                                                                                           tgCGCAGAATATGATGAATGCGCCAACCTGCTGAGAGATGAGAACCAGCATCATCTGCAGCAGCTCATTCCCCAGCCGGGTCAGCAGTATGATGAGGAGTCCGCCCTCTATTACAAACGCCACCGCTATTATGACCCGCAGCTAGGGCg                               >  8:19400/1‑149 (MQ=17)                                                                                                aGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGtata                          <  7:19400/149‑1 (MQ=255)                                                                                                         tgaATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGc                                                            <  4:135385/106‑1 (MQ=255)                                                                                                         tgaATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGc                                                            >  3:135385/1‑106 (MQ=255)                                                                                                           aaTGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAt               >  8:113360/1‑149 (MQ=255)                                                                                                           aaTGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAt               >  4:54198/1‑149 (MQ=255)                                                                                                                      ctgctgAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACt    <  7:113360/149‑1 (MQ=255)                                                                                                                         ctgAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGa  <  7:17525/148‑1 (MQ=255)                                                                                                                           |                                                                                                                                                  TACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGA  >  NC_000913/3767344‑3767611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.