| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3311399 = | 47 (1.390) | 4 (0.120) | 4/256 | 3.7 | 9.7% | intergenic (+1/+16) | psrO/rpsO | novel sRNA, function unknown/30S ribosomal subunit protein S15 |
| ? | NC_000913 | 3311478 = | 30 (0.940) | coding (207/270 nt) | rpsO | 30S ribosomal subunit protein S15 | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCCAGCTCTATGTGGGTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCGCAGCAGACCACGACGGCTGTG > NC_000913/3311262‑3311534 | cccAGCTCTATGTGGGTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGTTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGc > 4:105318/1‑148 (MQ=255) cAGCTCTATGTGGGTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCATTTTCTGAAACTCGc > 8:68458/1‑146 (MQ=255) gCTCTATGTGGGTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGTTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGaa < 3:105318/149‑1 (MQ=255) tgtgGGTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAAc > 6:13464/1‑134 (MQ=255) tgtgGGTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAAc < 5:13464/134‑1 (MQ=255) ggTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACg > 4:99014/1‑148 (MQ=255) aaGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGa < 7:25097/148‑1 (MQ=255) aTTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGc > 1:50914/1‑121 (MQ=255) aTTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGc < 2:50914/121‑1 (MQ=255) gcgcgAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGAt < 7:48428/146‑1 (MQ=255) gcgcgAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGAt > 8:48428/1‑146 (MQ=255) gcgAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGTCCCCTTTTCTGAAACTCGCAAGAATTAGCGa < 6:137572/124‑1 (MQ=255) gcgAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGTCCCCTTTTCTGAAACTCGCAAGAATTAGCGa > 5:137572/1‑124 (MQ=255) gcgAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCt < 3:128853/149‑1 (MQ=255) cAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTgg > 5:142334/1‑140 (MQ=255) gATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTc < 3:99014/149‑1 (MQ=255) tcattcatAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGa < 6:55179/109‑1 (MQ=255) tcattcatAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGa > 5:55179/1‑109 (MQ=255) attcatAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTgg > 5:119740/1‑128 (MQ=255) attcatAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTgg < 6:119740/128‑1 (MQ=255) attcatAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTa > 6:39530/1‑149 (MQ=255) acaaTACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTgg > 6:8958/1‑118 (MQ=255) acaaTACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTgg < 5:8958/118‑1 (MQ=255) tACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTc > 1:75847/1‑73 (MQ=255) tACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTc < 2:75847/73‑1 (MQ=255) cAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAAc > 4:96227/1‑109 (MQ=255) cAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAAc < 3:96227/109‑1 (MQ=255) aGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGCCGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGATACGTCTTTACGTTTACGGTAGTCGAGCAGTTTacga > 8:33937/1‑149 (MQ=255) gTGAATTGCTGTCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTa > 8:136602/1‑121 (MQ=255) gTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGttt < 4:96288/126‑1 (MQ=255) gTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGttt > 3:96288/1‑126 (MQ=255) aaTTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCt < 7:68458/149‑1 (MQ=255) tgcCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAg > 7:66534/1‑120 (MQ=255) tgcCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAg < 8:66534/120‑1 (MQ=255) tCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATg < 5:39530/149‑1 (MQ=255) aGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATgcg > 6:122452/1‑149 (MQ=255) ttGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTc < 3:87123/116‑1 (MQ=255) ttGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTc > 4:87123/1‑116 (MQ=255) gAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGt < 8:129769/95‑1 (MQ=255) gAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCgcag < 5:122452/147‑1 (MQ=255) gAAAAAAGGGGCCACTCAGGCACCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGt > 7:129769/1‑95 (MQ=255) aaaaGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCGCAGCAGAc > 7:8845/1‑149 (MQ=255) gggCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATg < 7:18406/134‑1 (MQ=255) gggCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATg > 8:18406/1‑134 (MQ=255) aGGCCGCCTTTTCTGAAACTCGCAAGAATTATCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCGCAGCAGACCACGACGGCtgtg < 7:33937/148‑1 (MQ=255) cTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAgg < 1:152491/85‑1 (MQ=255) cTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAgg > 2:152491/1‑85 (MQ=255) | CCCAGCTCTATGTGGGTAAAGCCTCTCATTAGCCGCGCGAACCTCTGCAACGGAAGATCATTCATAGCAACAATACATTAGTTTCCAGTGAATTGCTGCCGTCAGCTTGAAAAAAGGGGCCACTCAGGCCCCCTTTTCTGAAACTCGCAAGAATTAGCGACGCAGACCCAGGCGCTCGATGAGCTGGGTGTAACGTGCTACGTCTTTACGTTTCAGGTAGTCGAGCAGTTTACGACGCTGAGAAACCATGCGCAGCAGACCACGACGGCTGTG > NC_000913/3311262‑3311534 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |