New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 16454557 (1.050)5 (0.090) 5/262 NT 8.1% intergenic (+11/‑185) hrpB/mrcB putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase
?NC_000913 = 164568 57 (1.050)intergenic (+34/‑162) hrpB/mrcB putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase

CACGAGATTTGAGCGACTTCTGGAAAGGAGCGTACCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAA  >  NC_000913/164398‑164692
                                                                                                                                                   |                                                                                                                                                   
cacGAGATTTGAGCGACTTCTGGAAAGGAGCGTACCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGCCCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTtct                                                                                                                                                    >  8:188454/1‑149 (MQ=255)
cacGAGATTTGAGCGACTTCTGGAAAGGAGCGTACCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTtct                                                                                                                                                    <  8:30987/149‑1 (MQ=255)
      aTTTGAGCGACTTCTGGAAAGGAGCGTACCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTtctccctct                                                                                                                                              >  8:59151/1‑149 (MQ=255)
          gAGCGACTTCTGGAAAGGAGCGTACCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTctccctctccct                                                                                                                                          >  4:107293/1‑149 (MQ=255)
              gACTTCTGGAAAGGAGCGTACCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTgg                                                                                                                                      <  5:240431/149‑1 (MQ=255)
              gACTTCTGGAAAGGAGCGTACCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGAGAAGGACGAAAAAGTATTCTTAAGGTTGGTTTTCTCACTCTACCtgttg                                                                                                                                      >  1:70277/1‑147 (MQ=255)
                cTTCTGGAAAGGAGCGTACCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGga                                                                                                                                    <  2:117798/149‑1 (MQ=255)
                   cTGGAAAGGAGCGTACCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGgag                                                                                                                                   <  7:59151/147‑1 (MQ=255)
                      gAAAGGAGCGTACCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGc                                                                                                                              >  4:107425/1‑149 (MQ=255)
                          ggAGCGTACCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCtccctctcccacagggagagggagaaa                                                                                                                          <  4:140215‑M1/149‑28 (MQ=255)
                          ggAGCGTACCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCggg                                                                                                                          >  2:24472/1‑149 (MQ=255)
                                tACCGTGAGGAGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGGTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAgg                                                                                                                    <  5:16254/149‑1 (MQ=255)
                                  ccGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGc                                                                                                                  <  3:107425/149‑1 (MQ=255)
                                       aGGTGCAATAAGAGATGAAAGGGCGTTATCCCAAACATTGATTGCCGGACGACCCGGCAAATACTGCACCGACGCGACGTACGAAAAAGTTTTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCa                                                                                                              <  4:127600/148‑1 (MQ=38)
                                       aGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAg                                                                                                             >  3:40515/1‑149 (MQ=255)
                                        ggTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAgg                                                                                                                    >  4:110382/1‑141 (MQ=255)
                                        ggTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAgg                                                                                                                    <  3:110382/141‑1 (MQ=255)
                                         gTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgcg                                                                                                           >  2:238826/1‑149 (MQ=255)
                                             aaaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCa                                                                                                       <  7:386/149‑1 (MQ=255)
                                              aaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCAc                                                                                                      <  1:24472/149‑1 (MQ=255)
                                                  gctaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGAAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGGTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtc                                                                                                  <  2:70277/146‑1 (MQ=255)
                                                  gagaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtc                                                                                                  <  3:53412/149‑1 (MQ=255)
                                                     aTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGAGGGACGAAAAAGTATTCGTATGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtcacc                                                                                               <  5:178364/149‑1 (MQ=255)
                                                       gAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCtccctctcccacagggagaggg                                                                                                                               <  4:62034‑M1/115‑23 (MQ=255)
                                                       gAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtcacccg                                                                                             >  7:56812/1‑148 (MQ=255)
                                                       gAAAGGGCGTTATCCCAAACATGTCTGGCCGCACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtcaccct                                                                                             >  4:69152/1‑149 (MQ=255)
                                                        aaaGGGCGGTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCtccctctcccacagggagagggagaaaaccaaccttacgaatactttttcgtccgtc                                                                                            <  1:131623‑M1/149‑58 (MQ=255)
                                                            ggCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtcaccctcacc                                                                                         >  2:240875/1‑148 (MQ=255)
                                                                ttATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAAc                                                                                    >  7:22238/1‑149 (MQ=255)
                                                                  aTCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAAcc                                                                                   <  3:107293/148‑1 (MQ=255)
                                                                  aTCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAAcc                                                                                   <  2:50713/148‑1 (MQ=255)
                                                                  aTCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGGTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAAcc                                                                                   <  3:29822/148‑1 (MQ=255)
                                                                      cAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCgccctctcccacagggagagggagaaaaccaaccttacgaatactttt                                                                                                     <  6:151934‑M1/126‑49 (MQ=255)
                                                                      cAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCgccctctcccacagggagagggagaaaaccaaccttacgaatactttt                                                                                                     >  5:151934‑M1/1‑78 (MQ=255)
                                                                       aaaCATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTcc                                                                             >  7:251062/1‑149 (MQ=255)
                                                                              tCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAgg                                                                      >  2:128183/1‑149 (MQ=255)
                                                                              tCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCAACCTCACCCTAACCCTCTCCCTCAAgg                                                                      >  5:223393/1‑149 (MQ=255)
                                                                                       acgacCCGGCAAATTCTGCACCGAGGCGACTGACGAAAAAGTAGTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGAACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGa                                                             <  6:223393/149‑1 (MQ=38)
                                                                                        ccacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGAATTCGTACGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGAc                                                            <  6:191535/147‑1 (MQ=255)
                                                                                         gacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtc                                                                                                  <  6:227672/110‑1 (MQ=255)
                                                                                         gacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtc                                                                                                  >  5:227672/1‑110 (MQ=255)
                                                                                          acCCGGCAAATACAGCACCGACCCGACCGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCAAGTTAACCCTCACCCAAACCCACTCCCTCAAGGGAGAGGGGAcc                                                           >  6:121300/1‑148 (MQ=37)
                                                                                           cccGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgcgcgc                                                                                                        <  4:43243/102‑1 (MQ=255)
                                                                                           cccGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgcgcgc                                                                                                        >  3:43243/1‑102 (MQ=255)
                                                                                            ccGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGAt                                                        <  1:238826/149‑1 (MQ=255)
                                                                                            ccGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGAt                                                        >  8:175036/1‑149 (MQ=255)
                                                                                                cAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGGTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAg                                                    <  2:103009/149‑1 (MQ=255)
                                                                                                  aaTACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCAAACCCTCACCCTCAAGGGAGAGGGGACCGATCGAGcc                                                  >  7:99832/1‑148 (MQ=255)
                                                                                                       tGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCCCCCAAACCCTCTACCTCAAGGGAGAGGGGCCCGATCGAGGACAAAt                                             >  6:151618/1‑149 (MQ=38)
                                                                                                          aCCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGTGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGTGAGAGGGGACCGATCGAGCACAAAtttt                                          <  1:222028/149‑1 (MQ=255)
                                                                                                            cgacgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTga                                        <  3:69152/149‑1 (MQ=255)
                                                                                                            cgacgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTga                                        <  7:47952/149‑1 (MQ=255)
                                                                                                                gcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTga                                        >  6:236854/1‑145 (MQ=255)
                                                                                                                  gacggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGAgaaaaccaaccttacgaatactttttcgtccgtcgcgtcggtgcagtatttgccgggtcgtccggccagacatgtttgggataccgcccttt                                  <  1:131623‑M2/149‑93 (MQ=255)
                                                                                                                   acggactAAAAATTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGTAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGAGGACCGATCGAGCACAAATTTTGAGAGatat                                 <  8:22238/149‑1 (MQ=255)
                                                                                                                         gAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTACCTCAAGGGAGAGGGGACCGATCGACCACAAATTTTGAGAGATAtcttctt                           >  4:98735/1‑149 (MQ=255)
                                                                                                                          aaaaaGTATTCGTAAGGTTGGTTTGCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttcttc                          <  5:151618/149‑1 (MQ=255)
                                                                                                                           aaaaGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCgaaaaccaaccttacgaatactttttcgtccgtcgcgtcggtgcagtatttgccgggtcgtccggccagacatgtttg                                                <  6:151934‑M2/126‑79 (MQ=255)
                                                                                                                           aaaaGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCgaaaaccaaccttacgaatactttttcgtccgtcgcgtcggtgcagtatttgccgggtcgtccggccagacatgtttg                                                >  5:151934‑M2/1‑48 (MQ=255)
                                                                                                                           aaaaGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTACCCCTCTCCCTCAAGGGAGAGGGGCCCGATCGAGCACAAATTTTGAGAGATAtcttcttct                         >  1:28555/1‑149 (MQ=255)
                                                                                                                             aaGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGt                       >  1:56237/1‑149 (MQ=255)
                                                                                                                                  ttCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGt                  <  4:116169/149‑1 (MQ=255)
                                                                                                                                   tCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGTGAGGGCCGGGGTGAGGGAATCAGCTCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGt                  <  5:121300/148‑1 (MQ=255)
                                                                                                                                     gTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTaa                <  8:251062/148‑1 (MQ=255)
                                                                                                                                      tAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTGCCCCTAACCCGCGCCCGCCAGGGGGCGGGGGCCGCTCGGGCACAAATTTTGAGGGATATCTTCTTCTGTGTTGGaa                >  7:51313/1‑147 (MQ=21)
                                                                                                                                      tAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCACAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATATTATTATGTCTTGTaa                >  8:232878/1‑147 (MQ=255)
                                                                                                                                             ggttTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAgaagaa        <  7:175036/148‑1 (MQ=255)
                                                                                                                                                tttCTCCCTCTCCCTGTGGGAGAGGGAgaaaaccaaccttacgaatactttttcgtccgtcgcgtcggtgcagtatttgccgggtcgtccggccagacatgtttgggataacgccctttcatctctttttgcacctcacggtacgctcc    <  4:140215‑M2/149‑123 (MQ=255)
                                                                                                                                                 ttCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCACTCCCGCAATGGAGAGGGGGCCGCTCGAGCACAAATTTTGTGAGATATCTTCTTATGTGTTGTAACAGAAGAACAGa    >  7:13601/1‑148 (MQ=37)
                                                                                                                                                   ctccctctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCCCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTTATAGATATCTTCTTCTGTCATGTAACATAAGAACAGaaa  >  2:201585/1‑148 (MQ=39)
                                                                                                                                                   |                                                                                                                                                   
CACGAGATTTGAGCGACTTCTGGAAAGGAGCGTACCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAA  >  NC_000913/164398‑164692

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.