New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	514572 =	52 (0.960)	3 (0.060)	3/254	NT	5.6%	coding (288/459 nt)	ybbJ	inner membrane protein; stimulator of the QmcA suppressor of ftsH‑htpX
	?	NC_000913	514590 =	50 (0.950)					coding (270/459 nt)	ybbJ	inner membrane protein; stimulator of the QmcA suppressor of ftsH‑htpX

AGGGTTATCCCTTCTATCGCAATGACTTCAACATGCGTACCTGCACCGAGATCCTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTTCCACCACAGCCAGGCGGCGAGCAGCGTCAGGATGGCAAACATTACCCCTTGCCACTCCCAACCCAGCGGCAC  >  NC_000913/514426‑514715                                                                                                                                                   |                                                                                                                                                ccggcctggtggtctggctggtgccgctgggttgggagtggcaaggggtaatgtttgccatcctgacgctgctcgccgcctggctgtggtggaaatggttgtcgcggcgggtgcgcgaacaaaagcacagcgatagtcatttaaacCa                                                                                                                                                >  5:71066‑M1/147‑148 (MQ=255)       aTCCCTTCTATCGCAATGACTTCAACATGCGTACCTGCACCGAGATCCTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGctgctg                                                                                                                                         >  8:84110/1‑149 (MQ=255)          ccTTCTATCGCAATGACTTCAACATGCGTACCTGCACCGAGATCCTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGccc                                                                                                                                      >  5:145020/1‑149 (MQ=255)                   gCAATGACTTCAACATGCGTACCTGCACCGAGATCCTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGt                                                                                                                              <  6:235616/148‑1 (MQ=255)                     aaTGACTTCAACATGCGTACCTGCACCGAGATCCTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGttt                                                                                                                            >  6:101824/1‑148 (MQ=255)                         aCTTCAACATGCGTACCTGCACCGAGATCCTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGTTTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAAt                                                                                                                        <  5:57114/148‑1 (MQ=255)                          cTTCAACATGCGTACCTGCACCGAGATCCTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGa                                                                                                                      <  7:84110/149‑1 (MQ=255)                          cTTCAACATCCGTACCTGCACCGAGATCCTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACAAGCGGAGATTCAAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGa                                                                                                                      >  6:15569/1‑149 (MQ=255)                           ttCAACAAGCGTACCTGCACCGAGATCCTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGAc                                                                                                                     >  2:38678/1‑149 (MQ=255)                             cAACATGCGTACCTGCACCGAGATCCTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTa                                                                                                                   >  6:94067/1‑149 (MQ=255)                                 aTGCGTACCTGCACCGAGATCCTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGc                                                                                                               >  2:178207/1‑149 (MQ=255)                                   ggagtggcaaggggtaatgtttgccatcctgacgctgctcgccgcctggctgtggtggaaatggttgtcgcggcgggtgcgcgaacaaaagcacagcgatagtcatttaaatCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCtg                                                                                                             >  7:128439‑M1/113‑149 (MQ=255)                                   gCGTACCTGCACCGAGATCCTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCTGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCtg                                                                                                             >  5:29581/1‑149 (MQ=255)                                     gTACCTGCACCGAGATCCTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCtgtg                                                                                                           >  7:66960/1‑149 (MQ=255)                                     gTACCTGCACCGAGATCCTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGAtgtg                                                                                                           >  4:155705/1‑149 (MQ=255)                                        ccTGCACCGAGATCCTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGCCTATCGCTGTGCtt                                                                                                        >  1:81862/1‑149 (MQ=255)                                         cTGCACCGAGATCCTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCttt                                                                                                       >  1:119935/1‑149 (MQ=255)                                         cTGCACCGAGATCCTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCttt                                                                                                       <  5:68553/149‑1 (MQ=255)                                          caaggggtaatgtttgccatcctgacgctgctcgccgcctggctgtggtggaaatggttgtcgcggcgggtgcgcgaacaaaagcacagcgatagtcatttaaacCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCtttt                                                                                                      <  4:232977‑M1/44‑1 (MQ=255)                                             aCCGAGATCCTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGtt                                                                                                   <  3:155705/149‑1 (MQ=255)                                             aCCGAGATCCTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGtt                                                                                                   >  2:8405/1‑149 (MQ=255)                                                gtaatgtttgccatcctgacgctgctcgccgcctggctgtggtggaaatggttgtcgcggcgggtgcgcgaacaaaagcacagcgatagtcatttaaacCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTcgc                                                                                                >  3:232977‑M1/100‑149 (MQ=255)                                                   aTCCTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCt                                                                                                              >  6:131902/1‑132 (MQ=255)                                                   aTCCTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCt                                                                                                              <  5:131902/132‑1 (MQ=255)                                                     ccTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCAcc                                                                                           >  3:1063/1‑149 (MQ=255)                                                             gcgcTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGa                                                                                   <  1:185078/149‑1 (MQ=255)                                                                cTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACaa                                                                                <  1:178207/149‑1 (MQ=255)                                                                  gACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAAc                                                                               >  3:231429/1‑148 (MQ=255)                                                                         cATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCTGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTTcca                                                                       <  6:29581/149‑1 (MQ=255)                                                                         cATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTTcca                                                                       >  8:87635/1‑149 (MQ=255)                                                                          aTGAACTGTCACCGACGCGCATATGACCGCGCCAGTTGACCAGCGGAGTTTCCAGCACAAAACGTCTGACAATCAGCTGCTGCCAGCGCTGGTTTTAATGAGTATCGCTGTGCTTTTGTTCGCGCTCCCGCCGCGTCTTCGATTTccaa                                                                      >  4:162202/1‑148 (MQ=255)                                                                           tGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTTccacc                                                                     <  6:145020/149‑1 (MQ=255)                                                                             aaCTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCCCCGCGACAACCATTTccacca                                                                    <  5:94067/148‑1 (MQ=255)                                                                                 gTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTTCCACCACAGc                                                                >  7:122996/1‑148 (MQ=255)                                                                                    aCCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTTCCACCACAGCCAgg                                                            <  4:231429/149‑1 (MQ=255)                                                                                      cGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTaaa                                                                                                                         <  5:215874/86‑1 (MQ=255)                                                                                      cGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTaaa                                                                                                                         >  6:215874/1‑86 (MQ=255)                                                                                            gcATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACATTACGTCGGGCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACTACCATTTCCACCACAGCCAGGCGGCGagc                                                    <  8:224439/149‑1 (MQ=255)                                                                                                 tGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTTCCACCACAGCCAGGCGGCGAGCAGCGt                                               <  8:122996/149‑1 (MQ=255)                                                                                                      gcgcCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTTCCACCACAGCCAGGCGGCGAGCAGCGTCATGa                                          <  5:15569/149‑1 (MQ=255)                                                                                                      gcgcCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTTCCACCACAGCCAGGCGGCGAGCAGCGTCAGGa                                          <  7:209539/149‑1 (MQ=255)                                                                                                        gcCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTTCCACCACAGCCAGGCGGCGAGCAGCGTCAGGATg                                        <  7:87635/149‑1 (MQ=255)                                                                                                              tGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACAATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTTCCACCACAGCCAGGCGGCGAGCAGCGTCAGGATGGCAAAc                                  <  2:12434/149‑1 (MQ=255)                                                                                                                aCCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACaa                                                                                >  8:47634/1‑101 (MQ=255)                                                                                                                aCCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACaa                                                                                <  7:47634/101‑1 (MQ=255)                                                                                                                 ccAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTTCCACCACAGCCAGGCGGCGAGCAGCGTCAGGATGGCAAACAtt                               <  1:38678/149‑1 (MQ=255)                                                                                                                 ccAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTTCCACCACAGCCAGGCGGCGAGCAGCGTCAGGATGGCAAACAt                                >  3:89964/1‑148 (MQ=255)                                                                                                                  cAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTTCCACCACAGCCAGGCGGCGAGCAGCGTCAGGATGGCAAACATTa                              >  5:75359/1‑149 (MQ=255)                                                                                                                  cAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTACCACCACAGCCAGGCGGCGAGCAGCGTCAGGATGGCAAACATTa                              <  4:147891/149‑1 (MQ=255)                                                                                                                    gCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTTCCACCACAGCCAGGCGGCGAGCAGCGTCAGGATGGCAAACATTAcc                            >  3:129261/1‑149 (MQ=255)                                                                                                                         gaTTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTTCCACCACAGCCAGGCGGCGAGCAGCGTCAGGATGGCAAACATTACCCCTTg                       <  1:8405/149‑1 (MQ=255)                                                                                                                              cAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTTCCACCACAGCCAGGCGGCGCGCAGCGTCAGGATGGCAAACATTACCCCTTGCCACt                  >  6:111934/1‑149 (MQ=255)                                                                                                                                  acaAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTTCCCCCACAGCCAGGCGGCGAGCAGCGTCAGGATGGCCAACATTACCCCTTGCCACTccc               >  1:113575/1‑148 (MQ=255)                                                                                                                                    aaaaCGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTTCCACCACAGCCAGGCGGCGAGCAGCGTCAGGATGGCAAACATTACCCCTTGCCACTCCCAAc            <  2:119935/149‑1 (MQ=255)                                                                                                                                    aaaaCGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTTCCACCACAGCCAGGCGGCGAGCAGCGTCAGGATGGCAAACATTACCCCTTGCCACTCCCAAc            >  2:182976/1‑149 (MQ=255)                                                                                                                                      aaCCTCGGCCAATCAGCTGCAGCCCGCGCTCGTTTAAATGACTATCGAAGTGCTTTAGTTCTCGCACACGCAGCGACAACCAATTCCACCACAGCCAGGCGCCCAGCAGCGTCAGGATGTCAAACATTACCCCTTGCCACTCCCAAccc          <  3:162202/149‑1 (MQ=255)                                                                                                                                              ccAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTTCCACCACAGCCAGGCGGCGAGCAGCGTCAGGATGGCAAACATTACCCCTTGCCACTCCCAACCCAGCGGCAc  >  3:66448/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                AGGGTTATCCCTTCTATCGCAATGACTTCAACATGCGTACCTGCACCGAGATCCTCGCTGGCGCTGACAGGCCATGAACTGTCACCGACGCGCATATGACCGCGCCCGTTGACCAGCGGAGATTCCAGCACAAAACGTCGGCCAATCAGCTGCTGCCCGCGCTGGTTTAAATGACTATCGCTGTGCTTTTGTTCGCGCACCCGCCGCGACAACCATTTCCACCACAGCCAGGCGGCGAGCAGCGTCAGGATGGCAAACATTACCCCTTGCCACTCCCAACCCAGCGGCAC  >  NC_000913/514426‑514715

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.