New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3295515	52 (0.960)	3 (0.060)	3/248	NT	5.9%	coding (122/396 nt)	yraN	UPF0102 family protein
	?	NC_000913	= 3295532	47 (0.920)					coding (139/396 nt)	yraN	UPF0102 family protein

GGAACTTATCATGGCTACAGTACCAACAAGGTCAGGTAGTCCCCGTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTG  >  NC_000913/3295384‑3295677                                                                                                                                                     |                                                                                                                                                  ggAACTTATCATGGCTACAGTACCATCAAGGGCAGGTAGTCCCCGTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTg                                                                                                                                                   <  6:30785/149‑1 (MQ=255)      ttATCATGGCTACAGTACCAACAAGGTCAGGTAGTCCCCGTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGgcggc                                                                                                                                              <  3:75151‑M2/149‑6 (MQ=255)         tCATGGCTACAGTACCAACAAGGTCAGGTAGTCCCCGTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGgcggcga                                                                                                                                            >  1:64555‑M2/1‑141 (MQ=255)         tCATGGCTACAGTACCAACAAGGTCAGGTAGTCCCCGTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGgcggc                                                                                                                                              <  5:177038‑M2/146‑6 (MQ=255)           aTGGCTACAGTACCAACAAGGTCAGGTAGTCCCCGTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCgaga                                                                                                                                          <  8:149152/148‑1 (MQ=255)                tACAGTACCAACAAGGTCAGGTAGTCCCCGTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAgatcgatc                                                                                                                                    >  3:60870/1‑149 (MQ=255)                   aGTACCAACAAGGTCAGGTAGTCCCCGTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGa                                                                                                                                 <  4:221335/149‑1 (MQ=255)                       ccAACAAGGTCAGGTAGTCCCCGTCAGTTAACCACCAAACAGACCGGCGCTGCGTGGGAAGCACAAGCGCGGCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTTACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAAt                                                                                                                             <  5:168382/149‑1 (MQ=255)                       ccAACAAGGTCAGGTAGTCCCCGGCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAAt                                                                                                                             <  7:17985/149‑1 (MQ=255)                        caacaaGGTCAGGTAGTCCCCGTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAgatcga                                                                                                                                      >  1:248319/1‑139 (MQ=255)                        caacaaGGTCAGGTAGTCCCCGTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAgatcga                                                                                                                                      <  2:248319/139‑1 (MQ=255)                         aacaaGGTCAGGTAGTCCCCGTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGc                                                                                                                           >  6:197858/1‑149 (MQ=255)                           caaGGTCAGGTAGTCCCCGTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGt                                                                                                                         <  3:125504/149‑1 (MQ=255)                              ggTCAGGTAGTCCCCGTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATg                                                                                                                            >  2:80758/1‑143 (MQ=255)                              ggTCAGGTAGTCCCCGTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATg                                                                                                                            <  1:80758/143‑1 (MQ=255)                                  aGGTAGTCCCCGTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGCGCGCTCGGCGAATGCGTGAAGGcc                                                                                                                  >  8:184944/1‑149 (MQ=255)                                   ggTCGTCCCCGTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGTCTGGAAGGCAAAGGACTGCGGTGTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCg                                                                                                                 <  3:136807/149‑1 (MQ=255)                                   ggTAGTCCCCGTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCg                                                                                                                 <  5:46502/149‑1 (MQ=255)                                    gTAGTCCCAGTCAGTTAACCACCAAACAGACCCGCGATGCGTGTGAAGCACAAGCGCGTCGCTGGCTGGAAGGAAAAGGACTGCGGTTTATCGCCACTAACATGAACCAGCGTGGCGGCGAGATCGAGATCATAAAGAGTGAAGGCCgg                                                                                                                >  4:44735/1‑149 (MQ=255)                                          cccGTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGaccac                                                                                                           >  3:88498/1‑148 (MQ=255)                                                  ttAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATaa                                                                                                                              <  3:31066/121‑1 (MQ=255)                                                  ttAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGt                                                                                                                         >  6:89478/1‑126 (MQ=255)                                                  ttAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGt                                                                                                                         <  5:89478/126‑1 (MQ=255)                                                  ttAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGt                                                                                                  >  5:193356/1‑149 (MQ=255)                                                  ttAACCACCAAACAGACAGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCTTGGCGGCGAGATCGATCTGATaa                                                                                                                              >  4:31066/1‑121 (MQ=255)                                                     accaccAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGa                                                                                               <  5:139964/149‑1 (MQ=255)                                                       caccaAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAAAGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAgg                                                                                             >  2:141428/1‑149 (MQ=255)                                                          caAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTAc                                                                                          >  7:179254/1‑149 (MQ=255)                                                                           cGTGGGAAGCACAAGCGCGGCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTgcg                                                                         <  3:72784/149‑1 (MQ=255)                                                                                gAAGCACAAGCGCGGCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTa                                                                    <  5:120234/149‑1 (MQ=255)                                                                                    cacaAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATggc                                                                >  6:193594/1‑149 (MQ=255)                                                                                     acaAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATggcg                                                               >  7:18434/1‑149 (MQ=255)                                                                                     acaAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGATAACATGTACTAGCGTGGCTTCGAGATCGATCTGATAATTCGTGAAGGCCGGTCCAACTTTTTTGTCGATGTACGCTATCGCCGCTCTGCGCTTTATggcg                                                               <  3:44735/149‑1 (MQ=255)                                                                                       aaGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATggcggc                                                             >  3:28890/1‑149 (MQ=255)                                                                                         gcgcGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGgcggcgc                                                           <  3:16518/149‑1 (MQ=255)                                                                                         gcgcGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGgcggcgc                                                           >  3:62987/1‑149 (MQ=255)                                                                                           gcgTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGgcggcgcgg                                                         <  4:60870/149‑1 (MQ=255)                                                                                            cgTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGgcggcgcggc                                                        <  4:88498/149‑1 (MQ=255)                                                                                             gTCGCTGGCTGGAAGGCAAAGGACTGCGGGTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCa                                                       <  5:197858/149‑1 (MQ=255)                                                                                                  tggctggAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAg                                                  >  4:139455/1‑149 (MQ=255)                                                                                                    gctggAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAgtg                                                <  3:139455/149‑1 (MQ=255)                                                                                                    gctggAAGGCAAAGGACTGCGGATTATCGCCGCTAACGAGAACGAGCGTGGCGGCAAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGACGAGGTACGCAATCGCCGCTCTGCGCTTTATGGCGCCGCGGCAGCCAgtc                                                >  1:199034/1‑148 (MQ=255)                                                                                                        gAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGAc                                            <  8:179254/149‑1 (MQ=255)                                                                                                              aaaGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATggcg                                                               <  6:130318/124‑1 (MQ=255)                                                                                                              aaaGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATggcg                                                               >  5:130318/1‑124 (MQ=255)                                                                                                              aaaGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCgcag                                      >  3:125312/1‑149 (MQ=255)                                                                                                                   aCTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCaaa                                  >  7:249426/1‑148 (MQ=255)                                                                                                                    cTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAaac                                 >  8:216033/1‑148 (MQ=255)                                                                                                                     tGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCTGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCATTGTGACCCGCAGCAaacaa                               <  8:18434/149‑1 (MQ=255)                                                                                                                       cGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAaacaac                              <  5:193594/148‑1 (MQ=255)                                                                                                                          tttATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAAcaca                           >  2:198043/1‑148 (MQ=255)                                                                                                                              tCGCCGCTAACGTGAACGAGCGTGgcggcgataaaccgcagtcctttgccttccagccagcgacgcgcttgtgcttcccacgcatcgccggtctgtttggtggttaactgacggggactacctgaccttgttggtactgtagccatga                       <  3:129799‑M2/148‑125 (MQ=255)                                                                                                                                gccgcTAACGTGAACGAGCGTGgcggcgataaaccgcagtcctttgccttccagccagcgacgcgcttgtgcttcccacgcatcgccggtctgtttggtg                                                                     >  2:32434‑M2/1‑22 (MQ=255)                                                                                                                                gccgcTAACGTGAACGAGCGTGgcggcgataaaccgcagtcctttgccttccagccagcgacgcgcttgtgcttcccacgcatcgccggtctgtttggtg                                                                     <  1:32434‑M2/100‑79 (MQ=255)                                                                                                                                          tGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTGTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGcc          <  6:177038/149‑1 (MQ=255)                                                                                                                                                  cGTGGCGGCGAGATCGCTCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTTCGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTCCCCGCTggtg  <  2:23487/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GGAACTTATCATGGCTACAGTACCAACAAGGTCAGGTAGTCCCCGTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTG  >  NC_000913/3295384‑3295677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.