New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 580809	41 (0.990)	4 (0.110)	4/238	4.9	10.4%	intergenic (‑364/‑25)	ylcI/nohD	DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein
	?	NC_000913	1636449 =	33 (0.900)					intergenic (‑82/‑307)	nohQ/ynfO	pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCAGGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGT  >  NC_000913/580661‑580941                                                                                                                                                      |                                                                                                                                     ggTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTtct                                                                                                                                      <  5:43528/149‑1 (MQ=255)       cGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGAGGCCAAAAAGCTCGC‑TTTCAGCACCTGTCGTTTCCTTtcttttca                                                                                                                                 <  5:156267/148‑6 (MQ=11)        gCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGtttt                                                                                                                               >  6:120877/1‑149 (MQ=255)            tttATGAAAATTTTCCGGTTTAAGGTGTTTCCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGt                                                                                                                            <  5:157429/148‑1 (MQ=255)                tGAAAATTTTCCGGTTTAAGGTGTTTCCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGt                                                                                                                        <  8:74390/148‑1 (MQ=255)                 gAAAATTTTCCGGTTTAAGGTGTTTCCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTg                                                                                                                       >  2:123354/1‑148 (MQ=255)                                  aGGTGTTTCCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAACAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGt                                                                                                      <  8:90104/148‑1 (MQ=255)                                        ttCCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTcaacaa                                                                                                >  3:94802/1‑148 (MQ=255)                                          ccGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACaaaa                                                                                              <  1:123354/148‑1 (MQ=255)                                          ccGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACaaa                                                                                               >  6:158558/1‑147 (MQ=255)                                           cGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACaaaaa                                                                                             <  8:87755/148‑1 (MQ=255)                                                ttcttcGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAgct                                                                                       >  4:61488/1‑149 (MQ=255)                                                      gtcgtAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGa                                                                                 <  4:94802/149‑1 (MQ=255)                                                         gtAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACAt                                                                              >  2:208141/1‑149 (MQ=255)                                                         gtAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACAt                                                                              <  5:158558/149‑1 (MQ=255)                                                           aaCTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACAttt                                                                            >  8:88764/1‑149 (MQ=255)                                                            aCTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACAttt                                                                            <  5:110042/148‑1 (MQ=255)                                                            aCTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACAtatt                                                                           >  2:194632/1‑149 (MQ=255)                                                                aaTGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATgg                                                                                                          <  7:48069/114‑1 (MQ=255)                                                                aaTGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATgg                                                                                                          >  8:48069/1‑114 (MQ=255)                                                                  tGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGc                                                                     >  5:64093/1‑149 (MQ=255)                                                                    tatttattTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAgct                                                                                       >  4:9891/1‑129 (MQ=255)                                                                    tatttattTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAgct                                                                                       <  3:9891/129‑1 (MQ=255)                                                                    tatttattTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGc                                                                     >  5:114913/1‑147 (MQ=255)                                                                         atttaAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTAt                                                               <  7:88764/148‑1 (MQ=255)                                                                             aaaaTACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAAt                                                                                                                   >  6:63912/1‑92 (MQ=40)                                                                             aaaaTACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAAt                                                                                                                   <  5:63912/92‑1 (MQ=40)                                                                             aaaaTACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGt                                                           <  6:64093/148‑1 (MQ=255)                                                                               aaTACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGa                                                                   >  2:798/1‑138 (MQ=255)                                                                               aaTACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGa                                                                   <  1:798/138‑1 (MQ=255)                                                                                   cccccTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCAtt                                                     <  3:61488/148‑1 (MQ=255)                                                                                       cTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGaa                                                <  1:194632/149‑1 (MQ=255)                                                                                           aaagaaagGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATg                                                                                                           <  5:137420/86‑1 (MQ=255)                                                                                           aaagaaagGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATg                                                                                                           >  6:137420/1‑86 (MQ=255)                                                                                                               tGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCAGGAACAGGGAATGCCCg                         <  5:120877/149‑1 (MQ=255)                                                                                                                     aaGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAgctgg                                                                                     <  2:136629/83‑1 (MQ=255)                                                                                                                     aaGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAgctgg                                                                                     >  1:136629/1‑83 (MQ=255)                                                                                                                         gAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCAGGAACAGGGAATGCCCGTTCTGCGAgg               <  1:208141/149‑1 (MQ=39)                                                                                                                                     ctctGTCGTTTCTTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCAGGAACAGGGAATGCCCGTTCTGCg                  >  6:174896/1‑134 (MQ=37)                                                                                                                                     ctctGTCGTTTCTTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCAGGAACAGGGAATGCCCGTTCTGCg                  <  5:174896/134‑1 (MQ=37)                                                                                                                                       ctGTCGTTTCCTTTCTCTGTTTATGTCCGTGGAATGTGCAATGTAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCAGGAACAGGGAATGCCCGTTCTGCGAGTCGGTGGAAAGGGt  >  6:111281/1‑148 (MQ=255)                                                                                                                                         gTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCAGGAACAGGGAATGCCCGTTCTGc                   <  2:193602/129‑1 (MQ=38)                                                                                                                                         gTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCAGGAACAGGGAATGCCCGTTCTGc                   >  1:193602/1‑129 (MQ=38)                                                                                                                                                      |                                                                                                                                     GGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAG‑GTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCAGGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGT  >  NC_000913/580661‑580941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.