breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913756,4230CT51.5% ‑1.2 / 93.4 66Q173* (CAG→TAG) sdhAsuccinate dehydrogenase, flavoprotein subunit
*NC_000913756,0540CT43.1% 32.4 / 85.1 73Q50* (CAA→TAA) sdhAsuccinate dehydrogenase, flavoprotein subunit
*NC_0009134,296,0600CT32.3% 114.0 / 82.6 96intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Marginal new junction evidence (lowest skew 10 of 25 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 417180384 (1.040)10 (0.130) 6/276 9.3 10.2% intergenic (+47/‑254) rrfB/murB 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
?NC_000913 = 4213162 94 (1.180)intergenic (+3/‑72) rrfE/yjaA 5S ribosomal RNA of rrnE operon/stress‑induced protein
* ? NC_000913 = 394682424 (0.300)6 (0.080) 6/276 9.3 10.0% intergenic (+5/‑48) rrfC/aspT 5S ribosomal RNA of rrnC operon/tRNA‑Asp
?NC_000913 = 4171801 84 (1.050)intergenic (+45/‑256) rrfB/murB 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
* ? NC_000913 3423665 =NA (NA)6 (0.080) 6/276 9.3 6.8% intergenic (‑10/+3) thrV/rrfD tRNA‑Thr/5S ribosomal RNA of rrnD operon
?NC_000913 = 4171803 84 (1.040)intergenic (+47/‑254) rrfB/murB 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
* ? NC_000913 4542682 =124 (1.530)5 (0.070) 5/262 9.5 4.2% intergenic (+49/‑433) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 4542996 = 112 (1.480)intergenic (+363/‑119) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 4263211 =102 (1.260)5 (0.070) 5/264 9.6 5.0% intergenic (+129/+37) pspG/qorA phage shock protein G/quinone oxidoreductase, NADPH‑dependent
?NC_000913 4263250 = 92 (1.200)coding (982/984 nt) qorA quinone oxidoreductase, NADPH‑dependent
* ? NC_000913 = 2939095101 (1.250)5 (0.070) 5/264 9.6 5.0% coding (208/423 nt) fucU L‑fucose mutarotase
?NC_000913 = 2939106 95 (1.240)coding (219/423 nt) fucU L‑fucose mutarotase
* ? NC_000913 = 86467486 (1.060)6 (0.080) 5/264 9.6 6.7% coding (456/750 nt) moeB molybdopterin synthase sulfurylase
?NC_000913 = 864694 85 (1.110)coding (436/750 nt) moeB molybdopterin synthase sulfurylase
* ? NC_000913 = 455948896 (1.180)5 (0.060) 5/278 9.9 4.9% coding (39/1173 nt) iadA isoaspartyl dipeptidase
?NC_000913 = 4559512 98 (1.220)coding (15/1173 nt) iadA isoaspartyl dipeptidase
* ? NC_000913 = 312926279 (0.980)4 (0.050) 4/264 10.2 5.4% pseudogene (882/1101 nt) yghO pseudogene, IS‑interrupted
?NC_000913 = 3129279 67 (0.880)pseudogene (865/1101 nt) yghO pseudogene, IS‑interrupted
* ? NC_000913 = 417176196 (1.180)9 (0.110)
+TAG
4/274 10.4 8.5% intergenic (+5/‑296) rrfB/murB 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
?NC_000913 = 4213198 101 (1.250)intergenic (+39/‑36) rrfE/yjaA 5S ribosomal RNA of rrnE operon/stress‑induced protein