mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 31.9% | 211.6 / 130.6 | 169 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,286,965 | 0 | A | G | 20.9% | 227.6 / 34.1 | 134 | intergenic (+439/+101) | narI/rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| Marginal new junction evidence (lowest skew 10 of 177 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 94 (0.740) | 47 (0.420) | 40/262 | 4.0 | 35.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 88 (0.780) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 103 (0.810) | 29 (0.260) | 24/262 | 8.0 | 23.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 93 (0.820) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4542690 | 116 (0.910) | 12 (0.100) | 11/276 | 14.2 | 9.0% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 134 (1.130) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 110 (0.870) | 13 (0.110) | 11/276 | 14.2 | 9.9% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 134 (1.130) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4171803 | 98 (0.770) | 23 (0.180) | 11/290 | 14.8 | 17.4% | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913 | = 4213162 | 122 (0.980) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | 303617 = | 149 (1.180) | 11 (0.100) | 9/268 | 15.0 | 7.5% | intergenic (+12/+236) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein |
| ? | NC_000913 | 303650 = | 137 (1.190) | intergenic (+45/+203) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein | |||||
| * | ? | NC_000913 | = 2712126 | 109 (0.860) | 12 (0.100) | 9/274 | 15.3 | 10.8% | coding (639/738 nt) | trmN | tRNA1(Val) (adenine(37)‑N6)‑methyltransferase |
| ? | NC_000913 | = 2712133 | 97 (0.820) | coding (632/738 nt) | trmN | tRNA1(Val) (adenine(37)‑N6)‑methyltransferase | |||||
| * | ? | NC_000913 | = 580768 | 147 (1.160) | 10 (0.090) | 8/262 | 15.4 | 7.4% | intergenic (‑323/‑66) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| ? | NC_000913 | = 580793 | 118 (1.040) | intergenic (‑348/‑41) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein | |||||
| * | ? | NC_000913 | = 4341795 | 118 (0.930) | 9 (0.080) | 7/258 | 15.9 | 8.5% | intergenic (‑167/‑116) | melR/melA | melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding |
| ? | NC_000913 | = 4341815 | 91 (0.820) | intergenic (‑187/‑96) | melR/melA | melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | 3535781 = | 131 (1.030) | 8 (0.070) | 8/278 | 16.1 | 5.8% | coding (88/1353 nt) | envZ | sensory histidine kinase in two‑component regulatory system with OmpR |
| ? | NC_000913 | 3535814 = | 138 (1.150) | coding (55/1353 nt) | envZ | sensory histidine kinase in two‑component regulatory system with OmpR | |||||