breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0600CT31.9% 211.6 / 130.6 169intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*NC_0009131,286,9650AG20.9% 227.6 / 34.1 134intergenic (+439/+101)narI/rttRnitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript

Marginal new junction evidence (lowest skew 10 of 177 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 120780594 (0.740)47 (0.420) 40/262 4.0 35.4% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 88 (0.780)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 1207790 =103 (0.810)29 (0.260) 24/262 8.0 23.9% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 93 (0.820)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 4542690116 (0.910)12 (0.100) 11/276 14.2 9.0% intergenic (+57/‑425) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 = 4542986 134 (1.130)intergenic (+353/‑129) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 4542682 =110 (0.870)13 (0.110) 11/276 14.2 9.9% intergenic (+49/‑433) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 4542996 = 134 (1.130)intergenic (+363/‑119) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 = 417180398 (0.770)23 (0.180) 11/290 14.8 17.4% intergenic (+47/‑254) rrfB/murB 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
?NC_000913 = 4213162 122 (0.980)intergenic (+3/‑72) rrfE/yjaA 5S ribosomal RNA of rrnE operon/stress‑induced protein
* ? NC_000913 303617 =149 (1.180)11 (0.100) 9/268 15.0 7.5% intergenic (+12/+236) yagU/ykgJ DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein
?NC_000913 303650 = 137 (1.190)intergenic (+45/+203) yagU/ykgJ DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein
* ? NC_000913 = 2712126109 (0.860)12 (0.100) 9/274 15.3 10.8% coding (639/738 nt) trmN tRNA1(Val) (adenine(37)‑N6)‑methyltransferase
?NC_000913 = 2712133 97 (0.820)coding (632/738 nt) trmN tRNA1(Val) (adenine(37)‑N6)‑methyltransferase
* ? NC_000913 = 580768147 (1.160)10 (0.090) 8/262 15.4 7.4% intergenic (‑323/‑66) ylcI/nohD DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein
?NC_000913 = 580793 118 (1.040)intergenic (‑348/‑41) ylcI/nohD DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein
* ? NC_000913 = 4341795118 (0.930)9 (0.080) 7/258 15.9 8.5% intergenic (‑167/‑116) melR/melA melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding
?NC_000913 = 4341815 91 (0.820)intergenic (‑187/‑96) melR/melA melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding
* ? NC_000913 3535781 =131 (1.030)8 (0.070) 8/278 16.1 5.8% coding (88/1353 nt) envZ sensory histidine kinase in two‑component regulatory system with OmpR
?NC_000913 3535814 = 138 (1.150)coding (55/1353 nt) envZ sensory histidine kinase in two‑component regulatory system with OmpR