mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 26.3% | 58.3 / 22.1 | 38 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,080,621 | 0 | T | G | 23.7% | 64.0 / 25.1 | 38 | Q203P (CAA→CCA) | fdhE | formate dehydrogenase formation protein |
| * | NC_000913 | 4,080,616 | 0 | C | A | 21.9% | 87.7 / 20.5 | 41 | G205C (GGC→TGC) | fdhE | formate dehydrogenase formation protein |
| Marginal new junction evidence (lowest skew 10 of 43 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 925857 = | 35 (0.920) | 8 (0.230) +ACGGGCTTTTT |
6/242 | 3.7 | 20.0% | intergenic (+317/+27) | clpA/serW | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity/tRNA‑Ser |
| ? | NC_000913 | 1097195 = | NA (NA) | intergenic (+366/+370) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 4542682 = | 21 (0.550) | 6 (0.170) | 6/246 | 3.8 | 17.5% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 37 (1.040) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 1009602 | 31 (0.810) | 6 (0.170) | 6/250 | 3.8 | 16.1% | coding (1759/2109 nt) | rlmL | 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM‑dependent |
| ? | NC_000913 | = 1009624 | 33 (0.910) | coding (1781/2109 nt) | rlmL | 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM‑dependent | |||||
| * | ? | NC_000913 | = 1428823 | NA (NA) | 6 (0.160) | 6/254 | 3.9 | NA | pseudogene (28/189 nt) | lomR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion |
| ? | NC_000913 | = 1428833 | NA (NA) | pseudogene (38/189 nt) | lomR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion | |||||
| * | ? | NC_000913 | 1097379 = | NA (NA) | 6 (0.160) | 6/258 | 4.0 | 25.4% | intergenic (+550/+186) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097524 = | 18 (0.470) | intergenic (+695/+41) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1097165 = | NA (NA) | 6 (0.160) | 6/258 | 4.0 | 21.1% | intergenic (+336/+400) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097195 = | 23 (0.600) | intergenic (+366/+370) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1096981 = | 39 (1.020) | 6 (0.160) | 6/258 | 4.0 | 13.6% | intergenic (+152/+584) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097198 = | NA (NA) | intergenic (+369/+367) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 580753 = | 40 (1.050) | 5 (0.150) | 5/232 | 4.0 | 11.0% | intergenic (‑308/‑81) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| ? | NC_000913 | 580810 = | 46 (1.370) | intergenic (‑365/‑24) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein | |||||
| * | ? | NC_000913 | 3558891 = | 33 (0.870) | 5 (0.140) | 5/250 | 4.2 | 13.7% | coding (624/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression |
| ? | NC_000913 | 3558925 = | 32 (0.890) | coding (658/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression | |||||
| * | ? | NC_000913 | = 4179828 | 51 (1.340) | 6 (0.160) | 5/252 | 4.3 | 11.7% | intergenic (+245/‑168) | rplA/rplJ | 50S ribosomal subunit protein L1/50S ribosomal subunit protein L10 |
| ? | NC_000913 | = 4179850 | 42 (1.150) | intergenic (+267/‑146) | rplA/rplJ | 50S ribosomal subunit protein L1/50S ribosomal subunit protein L10 | |||||