breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0600CT26.3% 58.3 / 22.1 38intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*NC_0009134,080,6210TG23.7% 64.0 / 25.1 38Q203P (CAA→CCA) fdhEformate dehydrogenase formation protein
*NC_0009134,080,6160CA21.9% 87.7 / 20.5 41G205C (GGC→TGC) fdhEformate dehydrogenase formation protein

Marginal new junction evidence (lowest skew 10 of 43 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 925857 =35 (0.920)8 (0.230)
+ACGGGCTTTTT
6/242 3.7 20.0% intergenic (+317/+27) clpA/serW ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity/tRNA‑Ser
?NC_000913 1097195 = NA (NA)intergenic (+366/+370) ycdU/serX putative inner membrane protein/tRNA‑Ser
* ? NC_000913 4542682 =21 (0.550)6 (0.170) 6/246 3.8 17.5% intergenic (+49/‑433) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 4542996 = 37 (1.040)intergenic (+363/‑119) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 = 100960231 (0.810)6 (0.170) 6/250 3.8 16.1% coding (1759/2109 nt) rlmL 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM‑dependent
?NC_000913 = 1009624 33 (0.910)coding (1781/2109 nt) rlmL 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM‑dependent
* ? NC_000913 = 1428823NA (NA)6 (0.160) 6/254 3.9 NA pseudogene (28/189 nt) lomR pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion
?NC_000913 = 1428833 NA (NA)pseudogene (38/189 nt) lomR pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion
* ? NC_000913 1097379 =NA (NA)6 (0.160) 6/258 4.0 25.4% intergenic (+550/+186) ycdU/serX putative inner membrane protein/tRNA‑Ser
?NC_000913 1097524 = 18 (0.470)intergenic (+695/+41) ycdU/serX putative inner membrane protein/tRNA‑Ser
* ? NC_000913 1097165 =NA (NA)6 (0.160) 6/258 4.0 21.1% intergenic (+336/+400) ycdU/serX putative inner membrane protein/tRNA‑Ser
?NC_000913 1097195 = 23 (0.600)intergenic (+366/+370) ycdU/serX putative inner membrane protein/tRNA‑Ser
* ? NC_000913 1096981 =39 (1.020)6 (0.160) 6/258 4.0 13.6% intergenic (+152/+584) ycdU/serX putative inner membrane protein/tRNA‑Ser
?NC_000913 1097198 = NA (NA)intergenic (+369/+367) ycdU/serX putative inner membrane protein/tRNA‑Ser
* ? NC_000913 580753 =40 (1.050)5 (0.150) 5/232 4.0 11.0% intergenic (‑308/‑81) ylcI/nohD DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein
?NC_000913 580810 = 46 (1.370)intergenic (‑365/‑24) ylcI/nohD DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein
* ? NC_000913 3558891 =33 (0.870)5 (0.140) 5/250 4.2 13.7% coding (624/1599 nt) rtcR sigma 54‑dependent transcriptional regulator of rtcBA expression
?NC_000913 3558925 = 32 (0.890)coding (658/1599 nt) rtcR sigma 54‑dependent transcriptional regulator of rtcBA expression
* ? NC_000913 = 417982851 (1.340)6 (0.160) 5/252 4.3 11.7% intergenic (+245/‑168) rplA/rplJ 50S ribosomal subunit protein L1/50S ribosomal subunit protein L10
?NC_000913 = 4179850 42 (1.150)intergenic (+267/‑146) rplA/rplJ 50S ribosomal subunit protein L1/50S ribosomal subunit protein L10