breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0600CT40.5% 78.5 / 97.2 89intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Marginal new junction evidence (lowest skew 10 of 56 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2025229 =107 (1.110)7 (0.080) 7/252 9.0 6.3% noncoding (85/87 nt) dsrA sRNA antisense regulator enhances translation of RpoS, Hfq‑dependent
?NC_000913 2025254 = 109 (1.220)noncoding (60/87 nt) dsrA sRNA antisense regulator enhances translation of RpoS, Hfq‑dependent
* ? NC_000913 1552011 =127 (1.320)10 (0.110) 7/256 9.1 7.7% intergenic (+20/+387) fdnI/yddM formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator
?NC_000913 1552221 = NA (NA)intergenic (+230/+177) fdnI/yddM formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator
* ? NC_000913 = 356975891 (0.950)7 (0.080) 7/262 9.3 7.1% coding (1562/1974 nt) glgX glycogen debranching enzyme
?NC_000913 = 3569778 96 (1.040)coding (1542/1974 nt) glgX glycogen debranching enzyme
* ? NC_000913 = 232564100 (1.040)6 (0.070) 6/248 9.4 6.2% intergenic (+15/+33) yafE/mltD putative S‑adenosyl‑L‑methionine‑dependent methyltransferase/putative membrane‑bound lytic murein transglycosylase D
?NC_000913 = 232571 89 (1.020)intergenic (+22/+26) yafE/mltD putative S‑adenosyl‑L‑methionine‑dependent methyltransferase/putative membrane‑bound lytic murein transglycosylase D
* ? NC_000913 1115624 =NA (NA)6 (0.070) 6/250 9.5 NA intergenic (‑134/+38) mdtG/lpxL putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase
?NC_000913 1115655 = NA (NA)intergenic (‑165/+7) mdtG/lpxL putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase
* ? NC_000913 = 454988398 (1.020)3 (0.040)
+40 bp
3/192 9.6 4.2% intergenic (+173/+70) fimH/gntP minor component of type 1 fimbriae/fructuronate transporter
?NC_000913 4606556 = NA (NA)intergenic (‑155/+113) leuQ/rsmC tRNA‑Leu/16S rRNA m(2)G1207 methyltransferase, SAM‑dependent
* ? NC_000913 474028 =92 (0.960)6 (0.070) 6/260 9.7 6.4% coding (1063/1287 nt) amtB ammonium transporter
?NC_000913 474049 = 89 (0.970)coding (1084/1287 nt) amtB ammonium transporter
* ? NC_000913 = 22872669 (0.720)7 (0.080) 6/260 9.7 10.2% intergenic (+64/‑30) rrlH/rrfH 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon
?NC_000913 = 228738 57 (0.620)intergenic (+76/‑18) rrlH/rrfH 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon
* ? NC_000913 = 1203752119 (1.240)6 (0.060) 6/270 9.9 5.2% coding (485/558 nt) ymfL e14 prophage; putative DNA‑binding transcriptional regulator
?NC_000913 = 1203784 100 (1.050)coding (517/558 nt) ymfL e14 prophage; putative DNA‑binding transcriptional regulator
* ? NC_000913 = 3376260111 (1.150)6 (0.070) 5/248 10.0 5.7% intergenic (+24/+19) dcuD/sspB putative transporter/ClpXP protease specificity enhancing factor
?NC_000913 = 3376265 98 (1.120)intergenic (+29/+14) dcuD/sspB putative transporter/ClpXP protease specificity enhancing factor