| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3595984 = | 35 (1.260) | 4 (0.150) | 4/252 | 3.0 | 12.5% | coding (420/927 nt) | livH | branched‑chain amino acid ABC transporter permease |
| ? | NC_000913 | 3596035 = | 23 (0.870) | coding (369/927 nt) | livH | branched‑chain amino acid ABC transporter permease | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTTCCGCGCAGGCACGACACGCGCGACCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCATGGTGGTAATAGAGGCAGAGAAGTTTTCGCTATGCCCCACCACCCACTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAGGCTGACGTAGTTTTGCAGGAAGATGGACATACCGATTGCAGAGATGAGTGCAATCAGGCGCTTAGAGTTACGCACCGGGCGGTAAGCCAC > NC_000913/3595836‑3596124 | tgcgggattcgtcggcgcaatcgtcattgccagcgcctacggctggagtatcgaacgggtggcttaccgcccggtgcgtaactctaagcgcctgattgcactcatctctgcaatcggtatgtccatcttcctgcaaaactacgtcagcc < 3:113413‑M1/1‑1 (MQ=255) gcgcAGGCACGACACGCGCGACCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCATGGTGGTAATAGAGGCAGAGAAGTTTTCGCTATGCCCCACCACCCACTGAcc > 6:118762/1‑149 (MQ=255) gcAGGCACGACACGCGCGACCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCATGGTGGTAATAGAGGCAGAGAAGTTTTCGCTATGCCCCACCACCCACTGACCg > 7:79996/1‑148 (MQ=255) gcAGGCACGACACGCGCGACCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCATGGTGGTAATAGAGGCAGAGAAGTTTTCGCTATGCCCCACCACCCACTGACCg < 8:79996/148‑1 (MQ=255) cAGGCACGACACGCGCGACCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCATGGTGGTAATAGAGGCAGAGAAGTTTTCGCTATGCCCCACCACCCACTGACCGtt < 4:5502/149‑1 (MQ=255) gcccGACACGCGCGACCCCTGCGGGAATAGCGAATGACACTCGTCCGCGCCAGCATGGCGCGGAAGGTAACACTCCAGATCACCGCCTGCATGGTGGTAATAGAGGCAGAGAAGTTTTCGCTATGCCCCACCACCCACTGACCGTTaaa < 8:95685/146‑1 (MQ=255) gCACGACACGCGCGACCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCATGGTGGTAATAGAGGCAGAGAAGTTTTCGCTATGCCCCACCACCCACTGACCGTTaaa < 5:118762/149‑1 (MQ=255) aCGACACGCGCGACCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCATGGTGGTAATAGAGGCAGAGAAGTTTTCGCTATGCCCCACCACCCACTGACCGTTaaa < 8:95686/147‑1 (MQ=255) aCGACACGCGCGACCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCATGGTGGTAATAGAGGCAGAGAAGTTTTCGCTATGCCCCACCACCCACTGACCGTTaaa > 7:95686/1‑147 (MQ=255) gACCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCATGGTGGTAATAGAGGCAGAGAAGTTTTCGCTATGCCCCACCACCCACTGACCGTTAAACAGGCTCGGCAgc < 4:87907/149‑1 (MQ=255) tGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCATGGTGGTAATAGAGGCAGAGAAGTTTTCGCTATGCCCCACCACCCACTGACCGTTAAACAGGCTCGGCAGCGCCACg > 6:17924/1‑149 (MQ=255) gCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCATGGTGGTAATAGAGGCAGAGAAGTTTTCGCTATGCCCCACCACCCACTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGaa < 5:17924/148‑1 (MQ=255) gTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCATGGTGGTAATAGAGGCAGAGAAGTTTTCGCTATGCCCCACCACCCACTGACCGTTAAACa < 2:31331/109‑1 (MQ=255) gTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCATGGTGGTAATAGAGGCAGAGAAGTTTTCGCTATGCCCCACCACCCACTGACCGTTAAACa > 1:31331/1‑109 (MQ=255) cgcCAGCATAGCGAGTAAGGTAACAATCCAGATCACCGCCTGCATGGTGGTAATAGAGGCAGAGAAGTATACGCTATGCCCCACCACCCACTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAGGCTGACg > 8:36402/1‑148 (MQ=255) tggcttaccgcccggtgcgtaactctaagcgcctgattgcactcatctctgcaatcggtatgtccatcttcctgcaaaactacgtcagcCt > 7:62434‑M1/90‑91 (MQ=255) tggcttaccgcccggtgcgtaactctaagcgcctgattgcactcatctctgcaatcggtatgtccatcttcctgcaaaactacgtcagcCt < 8:62434‑M1/2‑1 (MQ=255) cAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCATGGTGGTAATAGAGGCAGAGAAGTTTTCGCTATGCCCCACCACCCACTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAGGCTGACGTAGt > 3:33629/1‑149 (MQ=255) accgcccggtgcttaactctaagctcctgattgcactcatctctgcaatcggtatgtccatcttcctgcaaaactacgtcagcCTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAg > 8:94291‑M1/84‑134 (MQ=255) accgcccggtgcgtaactctaagctcctgattgcactcatctctgcaatcggtatgtccatcttcctgcaaaactacgtcagcCTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAg < 7:94291‑M1/51‑1 (MQ=255) gAAGGTAACAATCCAGATCACCGCCTGCATGGTGGTAATAGAGGCAGAGAAGTTTTCGCTATGCCCCACCACCCACTGACCGTTAAACAGGCTCGGCAGCGCCACGTcgc > 5:80647/1‑110 (MQ=255) gAAGGTAACAATCCAGATCACCGCCTGCATGGTGGTAATAGAGGCAGAGAAGTTTTCGCTATGCCCCACCACCCACTGACCGTTAAACAGGCTCGGCAGCGCCACGTcgc < 6:80647/110‑1 (MQ=255) aaCAATCCAGATCACCGCCTGCATGGTGGTAATAGAGGCAGAGAAGTTTTCGCTATGCCCCACCACCCACTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAGGCTGACGTAGTTTTGCa < 2:111006/137‑1 (MQ=255) aaCAATCCAGATCACCGCCTGCATGGTGGTAATAGAGGCAGAGAAGTTTTCGCTATGCCCCACCACCCACAGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAGGCTGACGTAGTTTTGCa > 1:111006/1‑137 (MQ=255) tctaagcgcctgattgcactcatctctgcaatcggtatgtccatcttcctgcaaaactacgtcagcCTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAAc < 5:43108‑M1/41‑1 (MQ=255) tctaagcgcctgattgcactcatctctgcaatcggtatgtccatcttcctgcaaaactacgtcagcCTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAAc > 6:43108‑M1/67‑107 (MQ=255) aaTCCAGATCACCGCCTGCATGGTGGTAATAGAGGCAGAGAAGTTTTCGCTATGCCCCACCACCCACTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAGGCTGACGTAGTTTTGCAGGAAGATGGACATAc < 4:33629/149‑1 (MQ=255) ccGCCTGCATGGTGGTAATAGAGGCAGAGAAGTTTTCGCTATGCCCCACCACCCACTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAGGCTGACGTAGTTTTGCAGGAAGATGGACATACCGATTGCa > 1:1287/1‑146 (MQ=255) gCAGAGAAGTTTTCGCTATGCCCCACCACCCACTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAGGCTGACGTAGTTTTGCAGGAAGATGGACATACCGATTGCAGAGATGAGTGCAATCAGGCGCTTaga < 2:26896/149‑1 (MQ=255) gagaAGTTTTCGCTATGCCCCACCACCCACTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAGGCTGACGTAGTTTTGCAGGAAGATGGACATACCGATTGCAGAGATGAGTGCAATCAGGCGCTTAGAGtt < 7:36402/149‑1 (MQ=255) agaAGTTTTCGCTATGCCCCACCACCCACTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAGGc < 7:13498/81‑1 (MQ=255) agaAGTTTTCGCTATGCCCCACCACCCACTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAGGc > 8:13498/1‑81 (MQ=255) agaAGTTTTCGCTATGCCCCACCACCCACTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAGGCTGACGTAGTTTTGCAGGAAGATGGACATACCGATTGCAGAGATGAGTGCAATCAGGCGCtt > 5:55458/1‑142 (MQ=255) agaAGTTTTCGCTATGCCCCACCACCCACTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAGGCTGACGTAGTTTTGCAGGAAGATGGACATACCGATTGCAGAGATGAGTGCAATCAGGCGCtt < 6:55458/142‑1 (MQ=255) ttttCGCTATGCCCCACCACCCACTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAGGCTGACGTAGTTTTGCAGGAAGATGGACATACCGATTGCAGAGATGAGTGCAATCAGGCGCTTAGAGTTACGCAc < 2:1287/149‑1 (MQ=255) ccccACCACCCACTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAGGCTGACGTAGTTTTGCAGGAAGATGGACATACCGATTGCAGAGATGAGTGCAATCAGGCGCTTAGAGTTACGCACCGGGCGGTAAg > 4:113413/1‑149 (MQ=255) cccACCACCCACTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAGGCTGACGTAGTTTTGCAGGAAGATGGACATACCGATTGCAGAGATGAGTGCAATCAGGCGCTTAGAGTTACGCACCGGGCGGTAAGc > 1:98880/1‑149 (MQ=255) ccaccaCCCACTGACCGCTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAGGCTGACGTAGTTTTGCAGGAAGATGGACATACCGATTGCAGAGATGAGTGCAATCAGGCGCTTAGAGTTACGCACCGGGCGGTAAGc > 1:112384/1‑148 (MQ=255) agcacccacTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCTGTCAGGCTGACGTAGTTTTGCAGGAAGATGGACATACCGATTGCAGAGATGAGTGCAATCAGgcgc < 6:5914/118‑1 (MQ=255) accaccCACTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAGGCTGACGTAGTTTTGCAGGAAGATGGa > 4:29166/1‑86 (MQ=255) accaccCACTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAGGCTGACGTAGTTTTGCAGGAAGATGGa < 3:29166/86‑1 (MQ=255) accaccCACTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAGGCTGACGTAGTTTTGCAGGAAGATGGACATACCGATTGCAGAGATGAGTGCAATCAGGCGCTTAGAGTTACGCACCGGGCGGTAAGCCAc < 2:98880/149‑1 (MQ=255) | CTTCCGCGCAGGCACGACACGCGCGACCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCATGGTGGTAATAGAGGCAGAGAAGTTTTCGCTATGCCCCACCACCCACTGACCGTTAAACAGGCTCGGCAGCGCCACGTCGCGCGAACCTTCGGTCAGGCTGACGTAGTTTTGCAGGAAGATGGACATACCGATTGCAGAGATGAGTGCAATCAGGCGCTTAGAGTTACGCACCGGGCGGTAAGCCAC > NC_000913/3595836‑3596124 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |