New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 28289020 (0.720)6 (0.220) 5/260 2.7 21.6% coding (613/909 nt) yagE 2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage
?NC_000913 = 282923 24 (0.880)coding (646/909 nt) yagE 2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage

ACACCATCGACTCCGTCGCCCACCTGCGCAGCATGATCCATACCGTCAAAGGTGCCCATCCGCACTTCACCGTGCTCTGCGGCTACGACGATCATCTGTTCAATACCCTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGGCAACTTTGCCCCGCAGGTGTCGGTGAATCTTCTGAAAGCCTGGCGCGACGGGGACGTGGCGAAAGCGGCCGGGTATCATCAGACCTTGCTGCAAATTCCGCAGATGTATCAGCTGGATACGCCGTTTGTGAACGTGATTAAAGAG  >  NC_000913/282780‑283069
                                                                                                                                               |                                                                                                                                                  
acacCATCGACTCCGTCGCCCACCTGCGCAGCATGATCCATACCGTCAAAGGTGCCCATCCGCACTTCACCGTGCTCTGCGGCTACGACGATCATCTGTTCAATACCCTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGGCAAc                                                                                                                                               <  6:81477/149‑1 (MQ=255)
  acCATCGACTCCGTCGCCCACCTGCGCAGCATGATCCATACCGTCAAAGGTGCCCATCCGCACTTCACCGTGCTCTGCGGCTACGACGATCATCTGTTCAATACCCTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGGCAACtt                                                                                                                                             <  7:43475/149‑1 (MQ=255)
        gACTCCGTCGCCCCCCTGCGCAGCATGATCCATACCGTCAAAGGTGCCCATCCGCACTTCACCGTGCTCTGCGGCTACGACGATCATCTGTTCAATACCCTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGGCAACTTTGcccc                                                                                                                                       >  7:51236/1‑149 (MQ=255)
             cGTCGCCCACCTGCGCAGCATGATCCATACCGTCAAAGGTGCCCATCCGCACTTCACCGTGCTCTGCGGCTACGACGATCATCTGTTCAATACCCTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGGCAACTTTGCCCCGCAgg                                                                                                                                  >  2:50353/1‑149 (MQ=255)
             cGTCGCCCACCTGCGCAGCATGATCCATACCGTCAAAGGTGCCCATCCGCACTTCACCGTGCTCTGCGGCTACGACGATCATCTGTTCAATACCCTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGGCAACTTTGCCCCGCAg                                                                                                                                   <  3:26359/148‑1 (MQ=255)
                                    tCCATACCGTCAAAGGTGCCCATCCGCACTTCACCGTGCTCTGCGGCTACGACGATCATCTGTTCAATACCCTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGGCAACTTTGCCCCGCAg                                                                                                                                   >  4:42823/1‑125 (MQ=255)
                                                          tCCGCACTTCACCGTGCTCTGCGGCTACGACGATCATCTGTTCAATACCCTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGGCAACTTTGCCCCGCAGGTGTCGGTGAATCTTCTGAAAGCCTGGCGCGACGGGGACGTGGCg                                                                                      >  1:91352/1‑148 (MQ=255)
                                                                   cACCGTGCTCTGCGGCTACGACGATCATCTGTTCAATACCCTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGGCAACTTTGCCCCGCAGGTGTCGGTGAATCTTCTGAAAGCCTGGCGCGACGGGGACGTGGCGAAAGCGGCCg                                                                            >  7:71381/1‑149 (MQ=255)
                                                                     ccGTGCTCTGCGGCTACGACGATCATCTGTTCAATACCCTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGGCAACTTTGCCCCGCAGGTGTCGGTGAATCTTCTGAAAGCCTGGCGCGACGGGGACGTGGCGAAAGCGGCCggg                                                                          >  2:117200/1‑149 (MQ=255)
                                                                                      gacgaTCATCTGTTCAATACCCTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGGCAACTTTGCCCCGCAGGTGTCGGTGAATCTTCTGAAAGCCTGGCGCGACGGGGACGTGGCGAAAGCGGCCGGGTATCATCAGACCTtgct                                                         >  7:84578/1‑149 (MQ=255)
                                                                                           tcatcTGTTCAATACCCTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGGCAACTTTGCCCCGCAGGTGTCGGTGAATCTTCTGAAAGCCTGGCGCGACGGGGACGTGGCGAAAGCGGCCGGGTATCATCAGACCTTGCTGCaaa                                                    <  8:71381/149‑1 (MQ=255)
                                                                                             atcTGTTCAATACCCTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGGCAACTTTGCCCCGCAGGTGTCGGTGAATCTTCTGAAAGCCTGGCGCGACGGGGACGTGGCGAAAGc                                                                                 <  8:22597/118‑1 (MQ=255)
                                                                                                 gTTCAATACCCTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGGCAACTTTGCCCCGCAGGTGTCGGTGAATCTTCTGAAAGCCTGGCGCGACGGGGACGTGGCGAAAGCGGCCGGGTATCATCAGACCTTGCTGCAAATTCCg                                               >  3:52013/1‑148 (MQ=255)
                                                                                                       tACCCTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGGCAACTTTGCCCCGCAGGTGTCGGTGAATCTTCTGAACGCCTGGCGCGACGGGGACGTGGCGAAAGCGGCCGGGTATCATCAGACCTTGCTGCAAATTCCGCAGATg                                         >  7:53714/1‑148 (MQ=255)
                                                                                                         cccTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGGCAACTTTGCCCCGCAGGTGTCGGTGAATCTTCTGAAAGCCTGGCGCGACGGGGACGTGGCGAAAGCGGCCGGGTATCATCAGACCTTGCTGCAAATTCCGCAGATGTAt                                      <  8:53714/149‑1 (MQ=255)
                                                                                                          ccTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGgcagggtattgaacagatgatcgtcgtagccgcagagcacggtgaagtgcggatgggcacctttgacggtatggatcatgctgcgcaggtgggcgacggagt                                              >  2:23440‑M2/1‑38 (MQ=255)
                                                                                                          ccTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGgcagggtattgaacagatgatcgtcgtagccgcagagcacggtgaagtgcggatgggcacctttgacggtatggatcatgctgcgcaggtgggcgacggagt                                              <  1:23440‑M2/140‑103 (MQ=255)
                                                                                                          ccTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGgcagggtattgaacagatgatcgtcgtagccgcagagcacggtgaagtgcggatgggcacctttgacggtatggatcatgctgcgcaggtgggcgacgga                                                <  5:87417‑M2/138‑101 (MQ=255)
                                                                                                          ccTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGgcagggtattgaacagatgatcgtcgtagccgcagagcacggtgaagtgcggatgggcacctttgacggtatggatcatgctgcgcaggtgggcgacgga                                                >  6:87417‑M2/1‑38 (MQ=255)
                                                                                                          ccTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGGCAACTTTGCCCCGCAGGTGTCGGTGAATCTTCTGAAAGCCTGGCGCGACGGGGACGTGGCGaaa                                                                                   >  2:136267/1‑103 (MQ=255)
                                                                                                          ccTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGGCAACTTTGCCCCGCAGGTGTCGGTGAATCTTCTGAAAGCCTGGCGCGACGGGGACGTGGCGaaa                                                                                   <  1:136267/103‑1 (MQ=255)
                                                                                                          ccTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGGCAACTTTGCCCCGCAGGTGTCGGTGAATCTTCTGAAAGCCTGGCGCGACGGGGACGTGGCGAAAGCGGCCGGGTATCATCAGACCTTGCTGCAAATTCCGCAGATGTAt                                      >  2:139092/1‑148 (MQ=255)
                                                                                                             gctgctCGGCGGCGACGGGGCGATATCGGCGAGCGgcagggtattgaacagatgatcgtcgtagccgcagagcacggtgaagtgcggatgggcacctttgacggtatggatcatgctgcgcaggtgggcgacggagtcgatggtgtctt                                  <  1:34184‑M2/149‑115 (MQ=255)
                                                                                                               tgctCGGCGGCGACGGGGCGATATCGGCGAGCGGCAACTTTGCCCCGCAGGTGGCGGTGAATCTTCTGAAAGCCTGGCGCGACGGGGACGTGGCGAAAGCGGCCGGGTATCATCAGACCTTGCTGCAAATTCCGCAGATGTATCAGCTg                                <  8:51236/149‑1 (MQ=255)
                                                                                                                 ctCGGCGGCGACGGGGCGATATCGGCGAGCGGCAACTTTGCCCCGCAGGTGTCGGTGAATCTTCTGAAAGCCTGGCGCGACGGGGACGTGGCGAAAGCGGCCGGGTATCATCAGACCTTGCTGCAAATTCCGCAGATGTATCAGCTgg                               <  1:50353/148‑1 (MQ=255)
                                                                                                                 ctCGGCGGCGACGGGGCGATATCGGCGAGCGGCAACTTTGCCCCGCAGGTGTCGGTGAATCTTCTGAAAGCCTGGCGCGACGGGGACGTGGCGAAAGCGGCCGGGTATCATCAGACCTTGCTGCAAATTCCGCAGATGTATCAGCTGGa                              <  1:117200/149‑1 (MQ=255)
                                                                                                                   cggcggCGACGGGGCGATATCGGCGAGCGGCAACTTTGCCCCGCAGGTGTCGGTGAATCTTCTGAAAGCCTGGCGCGACGGGGACGTGGCGAAAGCGGCCGGGTATCATCAGACCTTGCTGCAAATTCCGCAGATGTATCAGCTGGATa                            <  1:139092/149‑1 (MQ=255)
                                                                                                                                      tCGGCGAGCGgcagggtattgaacagatgatcgtcgtagccgcagagcacggtgaagtgcggatgggcacctttgacggtatggatcatgctgcgcaggtgggcgacggagtcgatggtgtctttgatgccgataatattgctgcgcga         >  2:34184‑M2/1‑10 (MQ=255)
                                                                                                                                      tCGGCGAGCGGCAACTTTGCCCCGCAGGTGTCGGTGAATCTTCTGAAAGCCTGGCGCGACGGGGACGTGGCGAAAGCGGCCGGGTATCATCAGACCTTGCTGCAAATTCCGCAGATGTATCAGCTGGATACGCCGTTTGTGAACGTGAt         <  2:91352/149‑1 (MQ=255)
                                                                                                                                             gCGGCAACTTTGCCCCGCAGGTGTCGGTGAATCTTCTGAAAGCCTGGCGCGACGGGGACGTGGCGAAAGCGGCCGGGTATCATCAGACCTTGCTGCAAATTCCGCAGATGTATCAGCTGGATACGCCGTTTGTGAACGTGATTAAagag  <  4:52013/149‑1 (MQ=255)
                                                                                                                                               |                                                                                                                                                  
ACACCATCGACTCCGTCGCCCACCTGCGCAGCATGATCCATACCGTCAAAGGTGCCCATCCGCACTTCACCGTGCTCTGCGGCTACGACGATCATCTGTTCAATACCCTGCTGCTCGGCGGCGACGGGGCGATATCGGCGAGCGGCAACTTTGCCCCGCAGGTGTCGGTGAATCTTCTGAAAGCCTGGCGCGACGGGGACGTGGCGAAAGCGGCCGGGTATCATCAGACCTTGCTGCAAATTCCGCAGATGTATCAGCTGGATACGCCGTTTGTGAACGTGATTAAAGAG  >  NC_000913/282780‑283069

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.