New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1388282NA (NA)11 (0.340) 10/222 2.2 NA noncoding (11/25 nt) REP114 (repetitive extragenic palindromic) element; contains 1 REP sequences REP114 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 1388285 NA (NA)noncoding (14/25 nt) REP114 (repetitive extragenic palindromic) element; contains 1 REP sequences REP114 (repetitive extragenic palindromic) element; contains 1 REP sequences

AGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCACGCGCTGCCAGACCTTTCAG  >  NC_000913/1388143‑1388433
                                                                                                                                              |                                                                                                                                                    
aGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAAcaccat                                                                                                                                                <  1:201556‑M2/149‑7 (MQ=255)
            aTTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTa                                                                                                                                     >  7:99167/1‑148 (MQ=255)
                              aaCTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCa                                                                                                                        <  1:184044/143‑1 (MQ=255)
                              aaCTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCa                                                                                                                        >  2:184044/1‑143 (MQ=255)
                                     aaaaCGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCGGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCGTCAGGCATATTAAAGTATggctt                                                                                                                          >  6:106561/1‑130 (MQ=255)
                                       aaCGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAgctg                                                                                                         >  1:78877/1‑149 (MQ=255)
                                               ggCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGc                                                                                                                 <  6:84222/133‑1 (MQ=255)
                                               ggCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGc                                                                                                                 >  5:84222/1‑133 (MQ=255)
                                                      cacaTACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGc                                                                                           <  8:99167/148‑1 (MQ=255)
                                                             cgcgATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCgg                                                                                            >  6:75847/1‑140 (MQ=255)
                                                             cgcgATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCgg                                                                                            <  5:75847/140‑1 (MQ=255)
                                                             cgcgATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCggtggt                                                                                   >  6:17517/1‑149 (MQ=255)
                                                                  ttGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGAtt                                                                               >  5:104775/1‑148 (MQ=255)
                                                                     ccAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCa                                                                            <  2:201556/148‑1 (MQ=255)
                                                                      cAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTa                                                                                                  <  2:66158/125‑1 (MQ=255)
                                                                      cAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTa                                                                                                  >  1:66158/1‑125 (MQ=255)
                                                                         taggTTGCGGTAATATGGTCTGAGTCAGATGAAGTAGGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCTTCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCGGCTTCGTAATCCGGCTc                                                                                         <  8:82302/128‑1 (MQ=255)
                                                                         taggTTGCGGCAAAATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGCTGGTGCAACACCATCAGGCATAATAAATTATGCTTTCAGTACAGACAGAGCAGCTACGTAATCCGGCTc                                                                                         >  7:82302/4‑131 (MQ=255)
                                                                            gTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAAcaccatcag                                                                                                                                             <  6:103090‑M2/76‑10 (MQ=255)
                                                                                     atatGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGa                                                            >  5:63715/1‑148 (MQ=255)
                                                                                       atGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAAcaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagaccatattcccgcaacttattggcaatcgcggtatgt                                                                 >  3:53477‑M2/1‑56 (MQ=255)
                                                                                       atGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAAcaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagaccatattcccgcaacttattggcaatcgcggtatgt                                                                 <  4:53477‑M2/141‑86 (MQ=255)
                                                                                         ggTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAgctgct                                                                                                       <  7:33368/101‑1 (MQ=255)
                                                                                         ggTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAgctgct                                                                                                       >  8:33368/1‑101 (MQ=255)
                                                                                           tCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATca                                                      >  8:39630/1‑148 (MQ=255)
                                                                                             tGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATcac                                                     >  1:47702/1‑147 (MQ=255)
                                                                                             tGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATcac                                                     <  2:47702/147‑1 (MQ=255)
                                                                                                gTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAgctggc                                                               <  7:140217/134‑1 (MQ=255)
                                                                                                gTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAgctggc                                                               >  8:140217/1‑134 (MQ=255)
                                                                                                 tCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAAcaccatcaggcatattcgcgcttactcttcgttcttcttct                                                                                                             >  3:55824‑M2/1‑46 (MQ=255)
                                                                                                 tCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAAcaccatcaggcatattcgcgcttactcttcgttcttcttct                                                                                                             <  4:55824‑M2/87‑42 (MQ=255)
                                                                                                 tCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTc                                               <  2:78877/149‑1 (MQ=255)
                                                                                                   agaagaagaACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAgc                                                                   <  7:113901/127‑1 (MQ=255)
                                                                                                   agaagaagaACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAgc                                                                   >  8:113901/1‑127 (MQ=255)
                                                                                                   agaagaagaACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCAt                                             >  6:88511/1‑149 (MQ=255)
                                                                                                     aagaagaaCGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCttt                                                                                                                          <  8:60873/70‑1 (MQ=255)
                                                                                                            aCGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCggtggt                                                                                   <  6:1603/102‑1 (MQ=255)
                                                                                                            aCGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCggtggt                                                                                   >  5:1603/1‑102 (MQ=255)
                                                                                                             cGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGa                                                                                 <  8:144850/103‑1 (MQ=255)
                                                                                                             cGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGa                                                                                 >  7:144850/1‑103 (MQ=255)
                                                                                                              gAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATa                                  <  6:104775/149‑1 (MQ=255)
                                                                                                                   gTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACcac                             <  6:63715/149‑1 (MQ=255)
                                                                                                                    tAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACAtt                                                  >  1:65342/1‑127 (MQ=255)
                                                                                                                    tAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACAtt                                                  <  2:65342/127‑1 (MQ=255)
                                                                                                                            aaTATGCCTGATGGTGTTGCACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCAc                     <  6:69074/148‑1 (MQ=255)
                                                                                                                             atatGCCTGATGGTGCAAcaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagaccatattcccgcaacttattggcaatcgcggtatgtgaaacgccgagacgttttgccagtttgcgcgtgctgggataattgc                   <  1:184672‑M2/149‑132 (MQ=255)
                                                                                                                             atatGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCAcgc                   <  5:88511/149‑1 (MQ=255)
                                                                                                                                  ccTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAg                                                                    >  3:79212/1‑95 (MQ=255)
                                                                                                                                  ccTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAg                                                                    <  4:79212/95‑1 (MQ=255)
                                                                                                                                   cTGATGGTGTTGCACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACAtt                                                  <  3:141629/112‑1 (MQ=255)
                                                                                                                                   cTGATGGTGTTGCACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACAtt                                                  >  4:141629/1‑112 (MQ=255)
                                                                                                                                   cTGATGGTGCAAcaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagcccatattcccgcaacttattggcaatcgcggtatgtgaaacgccgagacgttttgccagtttgcgcgtgctgggataattgcgata               <  2:150137‑M2/147‑136 (MQ=255)
                                                                                                                                   cTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCACGCGCTGc              >  1:133697/1‑148 (MQ=255)
                                                                                                                                    tGATGGTGCAAcaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagaccatattcccgcaacttattggcaatcgcggtatgtgaaacgccgagacgttttgccagtttgcgcgtgctgggataattgcgataaag            <  4:149106‑M2/149‑139 (MQ=255)
                                                                                                                                    tGATGGTGCAAcaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagaccatattcccgcaacttattggcaatcgcggtatgtgaaacgccga                                                       >  6:84494‑M2/1‑11 (MQ=255)
                                                                                                                                    tGATGGTGCAAcaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagaccatattcccgcaacttattggcaatcgcggtatgtgaaacgccga                                                       <  5:84494‑M2/106‑96 (MQ=255)
                                                                                                                                    tGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCACGCGCTGc              >  4:61298/1‑147 (MQ=255)
                                                                                                                                     gATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCggt                                                                                      <  6:66962/74‑1 (MQ=255)
                                                                                                                                     gATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCggt                                                                                      >  5:66962/1‑74 (MQ=255)
                                                                                                                                         gTGCAAcaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagaccatattcccgcaacttattggcaatcgcggtatgtgaaacgccgagacgttttgccagtttgcgcgtgctgggataattgcgataaagctggg       >  3:149106‑M2/1‑6 (MQ=255)
                                                                                                                                         gTGCAAcaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagaccatattcccgcaacttattggcaatcgcggtatgtgaaacgccgagacgttttgccagtttgcgcgtgctgggataattgcgataaagctgg        >  2:184672‑M2/1‑6 (MQ=255)
                                                                                                                                         gTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCACGCGCTGCCAGACCt       >  6:172310/1‑149 (MQ=255)
                                                                                                                                              acacCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGATAATCACATTGTCATTTTCGTCAATAACCACAACGGCACGCGCTGCCAGACCTTTCAg  >  7:31986/1‑149 (MQ=255)
                                                                                                                                              |                                                                                                                                                    
AGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCACGCGCTGCCAGACCTTTCAG  >  NC_000913/1388143‑1388433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.