New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 27262050 (0.000)3 (0.040) 3/252 NT 100% intergenic (‑17/+76) rrfG/rrlG 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon
?NC_000913 = 2726217 NA (NA)intergenic (‑29/+64) rrfG/rrlG 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon

CGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAA  >  NC_000913/2726058‑2726353
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cGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGA                                                                                                                                                      <  2:322106‑M1/148‑1 (MQ=255)
   aTAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGc                                                                                                                                                  <  5:45784/149‑1 (MQ=11)
                                                                             cTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGAacgcagaagcggtctgataaaac                                                                                                                               <  3:127670‑M1/94‑24 (MQ=255)
                                                                             cTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGAacgcagaagcggtctgataaaac                                                                                                                               >  4:127670‑M1/1‑71 (MQ=255)
                                                                                                     gTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGAacgcagaagcggtctga                                                                                                                                     <  6:360009‑M1/64‑18 (MQ=255)
                                                                                                                                              aTCAGAacgcagaagcggtctgataaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgcc       <  6:73441‑M1/149‑144 (MQ=255)
                                                                                                                                              aTCAGAacgcagaagcggtctgataaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgcc       >  3:246153‑M1/1‑6 (MQ=255)
                                                                                                                                              aTCAGAacgcagaagcggtctgataaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgc        >  1:54713‑M1/1‑6 (MQ=255)
                                                                                                                                              aTCAGAacgcagaagcggtctgataaaacagaatttgcctggcggccgtagagcggtggtcccacctgaccccatgccgaactcagaagtgaaaagacgtagcgccgatggaagtgtggggtctccccatgcgagagtagggaactga        >  7:85775‑M1/1‑6 (MQ=255)
                                                                                                                                               tCAGAacgcagaagcggtctgataaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgcca      <  3:200874‑M1/149‑145 (MQ=255)
                                                                                                                                               tCAGAacgcagaagcggtctgataaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgcca      <  5:95603‑M1/149‑145 (MQ=255)
                                                                                                                                               tCAGAacgcagaagcggtctgataaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgcca      <  6:159971‑M1/149‑145 (MQ=255)
                                                                                                                                               tCAGAacgcagaagcggtctgataaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgcca      <  8:68000‑M1/149‑145 (MQ=255)
                                                                                                                                               tCAGAacgcagaagcggtctgataaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgcca      <  2:350933‑M1/149‑145 (MQ=255)
                                                                                                                                               tCAGAacgcagaagcggtctgataaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgc        >  4:83833‑M1/1‑5 (MQ=255)
                                                                                                                                               tCAGAacgcagaagcggtctgataaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgc        >  6:113264‑M1/1‑5 (MQ=255)
                                                                                                                                               tCAGAacgcagaagcggtctgataaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgc        >  7:162832‑M1/1‑5 (MQ=255)
                                                                                                                                                  gAacgcagaagcggtctgataaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgcctaactcagaagtgaaactccgtagcgacgatggtagtgtggggtctccccatgcgagagtagggacctgacagg    >  3:190158‑M1/1‑2 (MQ=255)
                                                                                                                                                  gAacgcagaagcggtctgataaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgccagg    >  4:146440‑M1/1‑2 (MQ=255)
                                                                                                                                                  gAacgcagaagcggtctgataaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgccagg    >  7:323699‑M1/1‑2 (MQ=255)
                                                                                                                                                   aacgcagaagcggtctgataaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgccaggca  >  8:74027‑M1/1‑1 (MQ=255)
                                                                                                                                                   aacgcagaagcggtctgataaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgccaggca  >  7:371587‑M1/1‑1 (MQ=255)
                                                                                                                                                   aacgcagaagcggtctgataaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgccaggca  <  2:81135‑M1/149‑149 (MQ=255)
                                                                                                                                                   aacgcagaagcggtctgataaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtctccccatgcgagagtagggaactgccaggca  >  2:159361‑M1/1‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
CGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAA  >  NC_000913/2726058‑2726353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.