New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2283740	43 (0.520)	4 (0.050)	4/250	NT	8.9%	coding (208/1008 nt)	yejK	spermidine nucleoid‑associated protein
	?	NC_000913	= 2283746	41 (0.530)					coding (202/1008 nt)	yejK	spermidine nucleoid‑associated protein

AATACTCCACCGCCAGATAGCGATAGTGGCAAAACAGCACGAATCCACCGTCAGCAAAAGGATATTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATGCAGTTCTGCCACCATCTCAACGACGGTTTCTGTCGGTTCCAGCAATGAATCGCGCAACACCAGCTCAAGGTTCTGC  >  NC_000913/2283602‑2283894                                                                                                                                                 |                                                                                                                                                     aaTACTCCACCGCCAGATAGCGATAGTGGCAAAACAGCACGAATCCACCGTCAGCAAAAGGATATTTCGCTAATTCGTCACGCAGGCGGCCGCTTGCCGCGCCGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGcagc                                                                                                                                                  <  1:195927‑M2/149‑5 (MQ=255)    aCTCCACCGCCAGATAGCGATAGTGGCAAAACAGCACGAATCCACCGTCAGCAAAAGGATATTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGcagcgtc                                                                                                                                               <  7:372015‑M2/149‑8 (MQ=255)    aCTCCACCGCCAGATAGCGATAGTGGCAAAACAGCACGAATCCACCGTCAGCAAAAGGATATTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGcagcgtc                                                                                                                                               <  4:117258‑M2/149‑8 (MQ=255)     cTCCACCGCCAGATAGCGATAGTGGCAAAACAGCACGAATCCACCGTCAGCAAAAGGATATTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGcagcgtc                                                                                                                                               >  8:27693‑M2/1‑141 (MQ=255)     cTCCACCGCCAGATAGCGATAGTGGCAAAACAGCACGAATCCACCGTCAGCAAAAGGATATTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCt                                                                                                                                              <  2:171235/149‑1 (MQ=255)      tCCACCGCCAGATAGCGATAGTGGCAAAACAGCACGAATCCACCGTCAGCAAAAGGATATTTGGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGGTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTg                                                                                                                                             >  4:152545/1‑149 (MQ=255)        cACCGCCAGATAGCGATAGTGGCAAAACAGCACGAATCCACCGTCAGCAAAAGGATATTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTgcg                                                                                                                                           >  5:224873/1‑149 (MQ=255)         aCCGCCAGATAGCGATAGTGGCAAAACAGCACGAATCCACCGTCAGCAAAAGGATATTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGACGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTgcgc                                                                                                                                          >  1:248472/1‑149 (MQ=255)         aCCGCCAGATAGCGATAGTGGCAAAACAGCACGAATCCACCGGCAGAAACAGGATAGTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCGAAATGCCAGGAAGTCCTCTTCGCCCTGACGCAGTCAGCGCAGCGTCTgcgc                                                                                                                                          >  1:275677/1‑149 (MQ=255)           cGCCAGATAGCGATAGTGGCAAAACAGCACGAATCCACCGTCAGCAAAAGGATATTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCa                                                                                                                                        <  8:215472/149‑1 (MQ=255)              cAGATAGCGATAGTGGCAAAACAGCACGAATCCACCGTCAGCAAAAGGATATTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGtt                                                                                                                                     <  1:366523/149‑1 (MQ=255)                  tAGAGATAGTGGCAAAACAGCACGAATCCACCGTCAGCAAAAGGATATTTCGCTAATTCGTCACGCATGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTATGCGCAGCGTCTGCG‑CAGTTCAct                                                                                                                                 <  8:347670/148‑1 (MQ=255)                              cAAAACAGCACGAATCCACCGTCAGCAAAAGGATATTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTaaa                                                                                                                     <  8:100532/149‑1 (MQ=255)                               aaaaCAGCACGAATCCACCGTCAGCAAAAGGATATTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTaaa                                                                                                                     >  5:113671/1‑148 (MQ=255)                                aaaCAGCACGAATCCACCGTCAGCAAAAGGATATTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAAc                                                                                                                    >  7:370062/1‑148 (MQ=255)                                    aGCACGAATCCACCGTCAGCAAAAGGATATTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGcc                                                                                                               <  3:109438/149‑1 (MQ=255)                                           aTCCACCGTCAGCAAAAGGATATTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCt                                                                                                        <  8:200466/149‑1 (MQ=255)                                           aTCCACCGTCAGCAAAAGGATATTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGAGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGCCGCTGTAAGAGCAGCGTCTGCGCCAGTTCACACTCTTCGCTAAACAAGCCGTAAGcg                                                                                                        >  3:43278/1‑148 (MQ=255)                                               aCCGTCAGCAAAAGGATATTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTAt                                                                                                    >  4:147889/1‑149 (MQ=255)                                                     aGCAAAAGGATATTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTg                                                                                               <  3:21727/148‑1 (MQ=255)                                                      gCAAAAGGATATTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGgc                                                                                             <  6:58080/149‑1 (MQ=255)                                                        aacaGGATATTTCGCTAATTCGTCACGCAGGCGGCCGGTGGCCGCGCGGCTAAATGCCAGGAACCCCTCTGCGCCCTGACGCTGTACCCGCAGCGTCTGCGCCAGCTCACTCTCTTCGCTAAACAAGCCGTACGCTTTATTTTTGgcgc                                                                                           <  2:39080/146‑1 (MQ=255)                                                        aaaaGGATATTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCa                                                                                                                                   >  3:317121/1‑109 (MQ=255)                                                        aaaaGGATATTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCa                                                                                                                                   <  4:317121/109‑1 (MQ=255)                                                            ggATATTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCtata                                                                                       <  8:370062/149‑1 (MQ=255)                                                                      cTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATg                                                                              >  2:279415/1‑148 (MQ=255)                                                                          ttCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATGCAGtt                                                                         <  4:47351/149‑1 (MQ=255)                                                                          ttCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATGCAGtt                                                                         <  3:117258/149‑1 (MQ=255)                                                                              tCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATGCAGTTCTGc                                                                     <  1:279415/149‑1 (MQ=255)                                                                              tCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATGCAGTTCTGc                                                                     <  2:175898/149‑1 (MQ=255)                                                                              tCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATGCAGTTCTGc                                                                     >  5:233157/1‑149 (MQ=255)                                                                              tCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATGCAGTTCTGc                                                                     >  8:32100/1‑149 (MQ=255)                                                                                                 ccGCGCGGCTACATGCCAGGACGTCCTCATCGCCCTGACGCCGGAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCAAACCAACCCGGCAGCTTTATTTTTGGCGCTATAGACCCGATGCCGTTCTGCCACCAGCTCCacgacgc                                                    <  2:195927/147‑2 (MQ=255)                                                                                                           aaaTGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATGCAGTTCTGCCACCATCTCAACGACGGTTTCTGTCGGtt                                        >  7:108326/1‑149 (MQ=255)                                                                                                             aTGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATGCAGTTCTGCCACCATCTCAACGACGGTTTCTGTCGGTTc                                       >  6:356832/1‑148 (MQ=255)                                                                                                                  aGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATGCAGTTCTGCCACCATCTCAACGACGGTTTCTGTCGGTTCCAGCaa                                 <  8:258805/149‑1 (MQ=255)                                                                                                                         ccTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATGCAGTTCTGCCACCATCTCAACGACGGTTTCTGTCGGTTCCAGCAATGAATcg                          <  7:32100/149‑1 (MQ=255)                                                                                                                         ccTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATGCAGTTCTGCCACCATCTCAACGACGGTTTCTGTCGGTTCCAGCAATGAATcg                          >  7:219436/1‑149 (MQ=255)                                                                                                                           tctTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATGCAGTTCTGCCACCATCTCAACGACGGTTTCTGTCGGTTCCAGCAATGAATcgcg                        >  8:152246/1‑149 (MQ=255)                                                                                                                            ctTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGATCCGATGCAGTTCTGCCACCATCTCAACGACGGTTTCTGTCGGTTCCAGCAATGAATcgcg                        >  5:34903/1‑148 (MQ=255)                                                                                                                             ttCGCCCTGACGCTGTAAGCGcagcgtcagggcgaagaggacttcctggcatttagccgcgcggcaaccggccgcctgcgtgacgaattagcgaaatatccttt                                                                   <  7:301452‑M2/104‑84 (MQ=255)                                                                                                                             ttCGCCCTGACGCTGTAAGCGcagcgtcagggcgaagaggacttcctggcatttagccgcgcggcaaccggccgcctgcgtgacgaattagcgaaatatccttt                                                                   >  8:301452‑M2/1‑21 (MQ=255)                                                                                                                             ttCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATGCAGTTCTGCCACCATCTCAACGACGGTTTCTGTCGGTTCCAGCAATGAATCgcgc                       >  4:335919/1‑148 (MQ=255)                                                                                                                             atCGCCCTGACTCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACATGCCGTAAGCTTTATTTTTGGAGCTATAGACCCGATGCATTTCAGCCACCATCTCAACGACGGTTTCTGTCGGTTCCAGCAATGAATcgcg                        <  3:152545/146‑1 (MQ=255)                                                                                                                               cGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATGCAGTTCTGCCACCATCTCAACGACGGTTTCTGTCGGTTCCAGCAATGAATCgcgc                       <  2:248472/146‑1 (MQ=255)                                                                                                                                gCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATGCAGTTCTGCCACCATCTCAACGACGGTTTCTGTCGGTTCCAGCAATGAATCGCGCAac                    <  6:224873/148‑1 (MQ=255)                                                                                                                                  ccTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTAttttt                                                                                                <  6:116226/70‑1 (MQ=255)                                                                                                                                  ccTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTAttttt                                                                                                >  5:116226/1‑70 (MQ=255)                                                                                                                                    tGACGCTGTAAGCGcagcgtcagggcgaagaggacttcctggcatttagccgcgcggcaaccggccgcctgcgtgacgaattagcgaaatatccttttgctgacggtggattcgtgctgttttgccactatcgctatctggcggtggag               <  8:285264‑M2/149‑136 (MQ=255)                                                                                                                                      aCGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATGCAGTTCTGCCACCATCTCAACGACGGTTTCTGTCGGTTCCAGCAATGAATCGCGCAACACCAGc              <  6:233157/148‑1 (MQ=255)                                                                                                                                        gCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATGCAGTTCTGCCACCATCTCAACGACGGTTTCTGTCGGTTCCAGCAATGAATCGCGCAACACCAGCTc            >  8:11738/1‑148 (MQ=255)                                                                                                                                          tGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATGCAGTTCTGCCACCATCTCAACGACGGTTTCTGTCGGTTCCAGCAATGAATCGCGCAACACCAGCTCAAg         >  7:126629/1‑149 (MQ=255)                                                                                                                                          tGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATGCAGTTCTGCCACCATCTCAACGACGGTTTCTGTCGGTTCCAGCAATGAATCGCGCAACACCAGCTCAAg         <  2:373972/149‑1 (MQ=255)                                                                                                                                            tAAGCGcagcgtcagggcgaagaggacttcctggcatttagccgcgcggcaaccggccgcctgcgtgacgaattagcgaaatatccttttgctgacggtggattcgtgctgttttgccactatcgctatctggcggtggagtatttgc        >  7:285264‑M2/1‑6 (MQ=255)                                                                                                                                             caGCGCAGCGTAGGAGCCCGTTCCCTCTCTGCGCTCACCCAGCCGTCAGCGTTATTTTGGGAGCTATAGACACGATGCAGTTCTTCCACCATCTCACCGACGGGTGCTGTCGGTTCCAGCAATGACTCGCGCAACACCAGCTCAAGGtt      <  2:275677/148‑1 (MQ=255)                                                                                                                                                 gcAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATGCAGTTCTGCCACCATCTCAACGACGGTTTCTGTCGGTTCCAGCAATGAATCGCGCAACACCAGCTCAAGGTTCTGc  <  3:335919/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     AATACTCCACCGCCAGATAGCGATAGTGGCAAAACAGCACGAATCCACCGTCAGCAAAAGGATATTTCGCTAATTCGTCACGCAGGCGGCCGGTTGCCGCGCGGCTAAATGCCAGGAAGTCCTCTTCGCCCTGACGCTGTAAGCGCAGCGTCTGCGCCAGTTCACTCTCTTCGCTAAACAAGCCGTAAGCTTTATTTTTGGCGCTATAGACCCGATGCAGTTCTGCCACCATCTCAACGACGGTTTCTGTCGGTTCCAGCAATGAATCGCGCAACACCAGCTCAAGGTTCTGC  >  NC_000913/2283602‑2283894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.