New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4268317 =NA (NA)5 (0.140) 5/250 4.4 NA noncoding (1/24 nt) REP319 (repetitive extragenic palindromic) element; contains 1 REP sequences REP319 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 4268341 = NA (NA)intergenic (+34/+468) tyrB/yjbS tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent/uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.

CGGTTTAAGTGCCGCTCAGGTTGACCGACTACGTGAAGAATTTGGTGTCTATCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTG  >  NC_000913/4268169‑4268465
                                                                                                                                                    |                                                                                                                                                    
cGGTTTAAGTGCCGCTCAGGTTGACCGACTACGTGAAGAATTTGGTGTCTATCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAg                                                                                                                                                      >  8:92896/1‑149 (MQ=255)
 ggTTTAAGTGCCGCTCAGGTTGACCGACTACGTGAAGAATTTGGTGTCTATCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGTAGGAAAGc                                                                                                                                                     <  7:4966/149‑1 (MQ=255)
       aGTGCCGCTCAGGTTGACCGACTACGTGAAGAATTTGGTGTCTATCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTg                                                                                                                                               <  1:181683/149‑1 (MQ=255)
       aGTGCCGCTCAGGTTGACCGACTACGTGAAGAATTTGGTGTCTATCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTg                                                                                                                                               <  1:59613/149‑1 (MQ=255)
            cGCTCAGGTTGACCGACTACGTGAAGAATTTGGTGTCTATCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCt                                                                                                                                          <  1:16276/149‑1 (MQ=255)
                        ccGACTACGTGAAGAATTTGGTGTCTATCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTAGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCa                                                                                                                              <  4:174/149‑1 (MQ=255)
                                 tGAAGAATTTGGTGTCTATCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAAtt                                                                                                                      >  4:141101/1‑148 (MQ=255)
                                 tGAAGAATTTGGTGTCTATCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAAtt                                                                                                                      >  8:11345/1‑148 (MQ=255)
                                 tGAAGAATTTGGTGTCTATCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAAtt                                                                                                                      >  4:131988/1‑148 (MQ=255)
                                   aagaaTTTGGTGTCTTTCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTaaa                                                                                                                   <  7:139096/149‑1 (MQ=255)
                                   aagaaTTTGGTGTCTATCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGc                                                                                                                                                     <  7:73103/115‑1 (MQ=255)
                                   aagaaTTTGGTGTCTATCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGc                                                                                                                                                     >  8:73103/1‑115 (MQ=255)
                                             tgtCTATCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGc                                                                                                         <  6:63273/149‑1 (MQ=255)
                                                   tctcATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCAc                                                                                                   >  2:88938/1‑149 (MQ=255)
                                                      cATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCActct                                                                                                >  2:145631/1‑149 (MQ=255)
                                                       aTCGACAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGAGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGACTGCATTGAAATTAAACTGTCGTCGCTTTCAc                                                                                                   <  2:158685/145‑1 (MQ=255)
                                                        tCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACtctt                                                                                               >  8:31820/1‑148 (MQ=255)
                                                          gCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACtctttct                                                                                            <  3:131988/149‑1 (MQ=255)
                                                            cAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACtctttctt                                                                                           >  1:200715/1‑148 (MQ=255)
                                                                 gTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAga                                                                                     <  2:120624/149‑1 (MQ=255)
                                                                          gtgtCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGAtttttt                                                                            >  2:3248/1‑149 (MQ=255)
                                                                              cGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGa                                                                         <  5:70980/148‑1 (MQ=255)
                                                                              cGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGa                                                                         >  6:70980/1‑148 (MQ=255)
                                                                               gCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATg                                                                       <  1:88938/149‑1 (MQ=255)
                                                                                        aaTACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTc                                                              >  1:78278/1‑149 (MQ=255)
                                                                                          tACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTa                                                            >  6:22857/1‑149 (MQ=255)
                                                                                           aCGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTAc                                                           >  2:179408/1‑149 (MQ=255)
                                                                                                  aTGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTga                                                       >  4:135408/1‑146 (MQ=255)
                                                                                                   tGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTga                                                       >  6:179608/1‑145 (MQ=255)
                                                                                                    gTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAg                                                                                      >  4:22048/1‑113 (MQ=255)
                                                                                                    gTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAg                                                                                      <  3:22048/113‑1 (MQ=255)
                                                                                                     tACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGata                                                 <  1:145631/149‑1 (MQ=255)
                                                                                                     tACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGat                                                  >  1:14305/1‑148 (MQ=255)
                                                                                                                gCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACtctttct                                                                                            >  7:124272/1‑95 (MQ=255)
                                                                                                                gCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACtctttct                                                                                            <  8:124272/95‑1 (MQ=255)
                                                                                                                 cggatctgTTTGCTGCGGTGATGTAATTCAGGAAAGCAGGCTGGAGCTACCGATCCTGCAGTGATATTAATCTGTCGTCGCTTTCAGTCTTTCTTTATAGATGATTTTTTTGATGGGATCGTTCTACGTGAGAGATAATTAACgttgt                                      <  4:123194/141‑1 (MQ=255)
                                                                                                                 cAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACgttgtt                                     <  1:179408/149‑1 (MQ=255)
                                                                                                                  aaaGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTa                                    <  2:200715/149‑1 (MQ=255)
                                                                                                                         tttGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACCTGAGAGATAATAAACgttgt                                      >  3:123194/1‑140 (MQ=255)
                                                                                                                            gctgcGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTa                           <  7:92896/148‑1 (MQ=255)
                                                                                                                             ctgcGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTAtt                         <  1:3248/149‑1 (MQ=255)
                                                                                                                                cGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGt                       <  3:135408/148‑1 (MQ=255)
                                                                                                                                     aTGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCt                 >  5:95205/1‑149 (MQ=255)
                                                                                                                                      tGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCtt                <  5:22857/149‑1 (MQ=255)
                                                                                                                                       gTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTa               >  8:15171/1‑149 (MQ=255)
                                                                                                                                               ggAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCCTTTATTGTTAAGCTTATc             <  6:60810/143‑1 (MQ=255)
                                                                                                                                               ggAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCCTTTATTGTTAAGCTTATc             >  5:60810/1‑143 (MQ=255)
                                                                                                                                                    gCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTg  <  7:15171/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
CGGTTTAAGTGCCGCTCAGGTTGACCGACTACGTGAAGAATTTGGTGTCTATCTCATCGCCAGCGGTCGCATGTGTGTCGCCGGGTTAAATACGGCAAATGTACAACGTGTGGCAAAGGCGTTTGCTGCGGTGATGTAATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGCAGTGAAATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTG  >  NC_000913/4268169‑4268465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.